TCP17 (Arabidopsis thaliana)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 AT5G08070 T343693_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP17
M07290_2.00		 Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a		 (Direct) (Direct)
TCP17
M07291_2.00		 Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.932 0.496
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.932 0.496
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.929 0.583
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.925 0.565
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.897 0.470
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.847 0.391
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.832 0.383
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G08070.1 TCP 31 204
AT5G08070.2 TCP 31 204

Links

Other TCP family TFs
Other Arabidopsis thaliana TFs

294 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_003_00568 Aquilegia coerulea Aquca_003_00568 I 0.000
BRADI1G27170 Brachypodium distachyon BRADI1G27170 I 0.000
Ca_02997 Cicer arietinum Ca_02997 I 0.000
Ciclev10004273m.g Citrus clementina Ciclev10004273m.g I 0.000
Eucgr.H04035 Eucalyptus grandis Eucgr.H04035 I 0.000
evm.TU.supercontig_929.1 Carica papaya evm.TU.supercontig_929.1 I 0.000
GLYMA07G37090 Glycine max GLYMA07G37090 I 0.000
GLYMA09G04310 Glycine max GLYMA09G04310 I 0.000
Gorai.011G198600 Gossypium raimondii Gorai.011G198600 I 0.000
GRMZM2G032336 Zea mays GRMZM2G032336 I 0.000
GSMUA_Achr8G10490_001 Musa acuminata GSMUA_Achr8G10490_001 I 0.000
MDP0000164873 Malus domestica MDP0000164873 I 0.000
MDP0000167705 Malus domestica MDP0000167705 I 0.000
MDP0000233860 Malus domestica MDP0000233860 I 0.000
mgf012030m Mimulus guttatus mgf012030m I 0.000
MTR_2g034650 Medicago truncatula MTR_2g034650 I 0.000
MTR_4g121840 Medicago truncatula MTR_4g121840 I 0.000
OB07G20740 Oryza brachyantha OB07G20740 I 0.000
OGLUM07G13800 Oryza glumaepatula OGLUM07G13800 I 0.000
OLONG_014480 Oryza longistaminata OLONG_014480 I 0.000
ONIVA07G13300 Oryza nivara ONIVA07G13300 I 0.000
OPUNC07G13630 Oryza punctata OPUNC07G13630 I 0.000
orange1.1g002476m.g Citrus sinensis orange1.1g002476m.g I 0.000
ORUFI07G15090 Oryza rufipogon ORUFI07G15090 I 0.000
OS07G0490200 Oryza sativa OS07G0490200 I 0.000
Pavir.Ba00948 Panicum virgatum Pavir.Ba00948 I 0.000
Q2WEL1_ORYSA Oryza sativa Q2WEL1_ORYSA D 0.000
Sb02g033620 Sorghum bicolor Sb02g033620 I 0.000
Si028862m.g Setaria italica Si028862m.g I 0.000
Traes_2AS_4C4190DEB Triticum aestivum Traes_2AS_4C4190DEB I 0.000
Traes_2BS_1A9DB766A Triticum aestivum Traes_2BS_1A9DB766A I 0.000
Traes_2DS_119508A0E Triticum aestivum Traes_2DS_119508A0E I 0.000