PCF6 (Oryza indica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 BGIOSGA013684 T343707_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.918 0.426
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.918 0.426
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.918 0.426
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.916 0.426
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.915 0.419
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.915 0.419
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.915 0.434
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.912 0.411
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.894 0.411
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.879 0.380
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.871 0.380
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.870 0.357
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.846 0.364
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.846 0.364
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.835 0.357
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.835 0.357
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA013684-PA TCP 50 178

Links

Other TCP family TFs
Other Oryza indica TFs

438 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_00594 Capronia coronata A1O1_00594 I 0.000
ATEG_04297 Aspergillus terreus CADATEAG00009296 N 0.000
ATEG_04854 Aspergillus terreus CADATEAG00010223 N 0.000
CADAFLAG00000127 Aspergillus flavus CADAFLAG00000127 N 0.000
GNLVRS01_PISO0E01016g Millerozyma farinosa GNLVRS01_PISO0E01016g N 0.000
GNLVRS01_PISO0I00844g Millerozyma farinosa GNLVRS01_PISO0I00844g N 0.000
HPODL_04541 Ogataea parapolymorpha HPODL_04541 N 0.000
M438DRAFT_64434 Aureobasidium pullulans M438DRAFT_64434 I 0.000
NFIA_004700 Neosartorya fischeri CADNFIAG00000040 N 0.000
PAN0_005c2519 Pseudozyma antarctica PAN0_005c2519 N 0.000
PHSY_000986 Pseudozyma hubeiensis PHSY_000986 N 0.000
PSEUBRA_SCAF5g02278 Pseudozyma brasiliensis PSEUBRA_SCAF5g02278 N 0.000
PV07_01234 Cladophialophora immunda PV07_01234 I 0.000
PV08_05182 Exophiala spinifera PV08_05182 N 0.000
PVAR5_2678 Byssochlamys spectabilis PVAR5_2678 N 0.000
sr13818 Sporisorium reilianum sr13818 N 0.000
UM02765 Ustilago maydis UM02765 N 0.000
Z519_01437 Cladophialophora bantiana Z519_01437 I 0.000
ZBAI_02843 Zygosaccharomyces bailii ZBAI_02843 I 0.000
ZBAI_09101 Zygosaccharomyces bailii ZBAI_09101 I 0.000