CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MLOC_63989
(
Hordeum vulgare
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
MLOC_63989
T344025_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.929
0.504
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY
RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.925
0.504
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC
GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.923
0.496
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC
GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.904
0.452
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.901
0.461
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.901
0.461
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.901
0.461
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.901
0.443
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC
GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.890
0.435
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY
RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.887
0.452
OS01G0213800
M11398_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.881
0.426
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC
GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.871
0.426
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.862
0.426
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.862
0.426
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.852
0.391
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.852
0.391
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MLOC_63989.1
TCP
71
239
SGGKDRHSKVYTSKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDELPSLDPAAFAAMPADHQAAPRAGKQQQGSRSLCSSTSETSKGSELSLSRSDCRVGGGSSRDKEVTVASNPSTQAGSFTELLTGAGSAGAAQHRQSWQQQRQLAVSAVAV
MLOC_63989.2
TCP
35
203
SGGKDRHSKVYTSKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDELPSLDPAAFAAMPADHQAAPRAGKQQQGSRSLCSSTSETSKGSELSLSRSDCRVGGGSSRDKEVTVASNPSTQAGSFTELLTGAGSAGAAQHRQSWQQQRQLAVSAVAV
Links
Other
TCP
family TFs
Other
Hordeum vulgare
TFs
438 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AFUA_7G04170
Aspergillus fumigatus
CADAFUAG00009404
N
ATEG_04297
Aspergillus terreus
CADATEAG00009296
N
BDDG_08117
Blastomyces dermatitidis
BDDG_08117
N
CADAFLAG00000127
Aspergillus flavus
CADAFLAG00000127
N
CADANGAG00010600
Aspergillus niger
CADANGAG00010600
N
EURHEDRAFT_460772
Aspergillus ruber
EURHEDRAFT_460772
N
FGRRES_16927
Fusarium graminearum
FGRRES_16927
N
FPSE_04457
Fusarium pseudograminearum
FPSE_04457
N
G647_01190
Cladophialophora carrionii
G647_01190
I
GNLVRS01_PISO0I18070g
Millerozyma farinosa
GNLVRS01_PISO0I18070g
N
GNLVRS01_PISO0J19831g
Millerozyma farinosa
GNLVRS01_PISO0J19831g
N
PAN0_005c2519
Pseudozyma antarctica
PAN0_005c2519
N
Pc12g14900
Penicillium chrysogenum
Pc12g14900
I
PCH_Pc12g14900
Penicillium rubens
PCH_Pc12g14900
I
PGUG_05832
Meyerozyma guilliermondii
PGUG_05832
I
PGUG_05832
Candida guilliermondii
PGUG_05832
I
PHSY_000986
Pseudozyma hubeiensis
PHSY_000986
N
PSEUBRA_SCAF5g02278
Pseudozyma brasiliensis
PSEUBRA_SCAF5g02278
N
PV06_04157
Exophiala oligosperma
PV06_04157
N
PVAR5_2678
Byssochlamys spectabilis
PVAR5_2678
N
SAPIO_CDS4479
Scedosporium apiospermum
SAPIO_CDS4479
I
sr13818
Sporisorium reilianum
sr13818
N
UM02765
Ustilago maydis
UM02765
N
V565_080510
Rhizoctonia solani
V565_080510
N
Z518_00888
Rhinocladiella mackenziei
Z518_00888
N
ZBAI_02843
Zygosaccharomyces bailii
ZBAI_02843
I
ZBAI_09101
Zygosaccharomyces bailii
ZBAI_09101
I