Cla018836 (Citrullus lanatus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cla018836 T344541_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.919 0.480
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.918 0.465
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.896 0.409
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.896 0.409
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.894 0.409
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.868 0.417
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.868 0.417
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.857 0.370
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.838 0.378
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.832 0.331
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.832 0.331
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.832 0.331
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.826 0.323
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.826 0.323
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla018836 TCP 39 165

Links

Other TCP family TFs
Other Citrullus lanatus TFs

330 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_027660 Acremonium chrysogenum ACRE_027660 N
BBA_04501 Beauveria bassiana BBA_04501 N
BBA_09954 Beauveria bassiana BBA_09954 N
CFIO01_13036 Colletotrichum fioriniae CFIO01_13036 N
CMQ_3223 Grosmannia clavigera CMQ_3223 N
EV44_g5051 Erysiphe necator EV44_g5051 N
e_gw1.20.1069.1 Nectria haematococca e_gw1.20.1069.1 N
F503_03071 Ophiostoma piceae uamh F503_03071 N
FFUJ_07951 Fusarium fujikuroi FFUJ_07951 N
FGRRES_02635 Fusarium graminearum FGRRES_02635 N
FOXG_10593 Fusarium oxysporum FOXG_10593 N
FPSE_00343 Fusarium pseudograminearum FPSE_00343 N
FVEG_09238 Fusarium verticillioides FVEG_09238 N
GGTG_00124 Gaeumannomyces graminis GGTG_00124 N
GMDG_08275 Pseudogymnoascus destructans GMDG_08275 N
M7I_0460 Glarea lozoyensis M7I_0460 N
MAC_04524 Metarhizium acridum MAC_04524 N
MAJ_08868 Metarhizium majus MAJ_08868 N
MAM_06926 Metarhizium album MAM_06926 N
MANI_004240 Metarhizium anisopliae MANI_004240 N
MAPG_05681 Magnaporthe poae MAPG_05681 N
MBM_02205 Marssonina brunnea MBM_02205 N
MGG_08114 Magnaporthe oryzae MGG_08114 N
MGU_08245 Metarhizium guizhouense MGU_08245 N
NechaG43231 Fusarium solani NechaG43231 N
OCS_05005 Ophiocordyceps sinensis OCS_05005 N
PFICI_06611 Pestalotiopsis fici PFICI_06611 N
S40285_07626 Stachybotrys chlorohalonata S40285_07626 N
S40288_04395 Stachybotrys chartarum S40288_04395 N
SBOR_4109 Sclerotinia borealis SBOR_4109 N
UV8b_6947 Ustilaginoidea virens UV8b_6947 N
V499_02835 Pseudogymnoascus pannorum V499_02835 N
VHEMI01627 Torrubiella hemipterigena VHEMI01627 N
X797_009183 Metarhizium robertsii X797_009183 N