Cucsa.047860 (Cucumis sativus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cucsa.047860 T344630_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.960 0.691
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.943 0.611
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.941 0.604
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.892 0.342
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.889 0.342
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.887 0.362
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.886 0.322
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.882 0.309
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.882 0.309
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.882 0.309
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.880 0.315
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.876 0.329
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.874 0.342
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.874 0.342
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.843 0.309
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.843 0.309
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.047860.1 TCP 86 234
Cucsa.047860.2 TCP 86 234
Cucsa.047860.3 TCP 86 234

Links

Other TCP family TFs
Other Cucumis sativus TFs

444 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC203957.3_FG004 Zea mays AC203957.3_FG004 N 0.000
BGIOSGA028522 Oryza indica BGIOSGA028522 N 0.000
BGIOSGA040512 Oryza indica BGIOSGA040512 N 0.000
BRADI3G22040 Brachypodium distachyon BRADI3G22040 N 0.000
BRADI4G27720 Brachypodium distachyon BRADI4G27720 N 0.000
F775_14757 Aegilops tauschii F775_14757 N 0.000
GRMZM2G092137 Zea mays GRMZM2G092137 N 0.000
LPERR08G10100 Leersia perrieri LPERR08G10100 N 0.000
LPERR09G03320 Leersia perrieri LPERR09G03320 N 0.000
MLOC_71104 Hordeum vulgare MLOC_71104 N 0.000
OB08G20490 Oryza brachyantha OB08G20490 N 0.000
OBART08G12060 Oryza barthii OBART08G12060 N 0.000
OBART09G04710 Oryza barthii OBART09G04710 N 0.000
OGLUM08G12880 Oryza glumaepatula OGLUM08G12880 N 0.000
OGLUM09G05500 Oryza glumaepatula OGLUM09G05500 N 0.000
OLONG_017657 Oryza longistaminata OLONG_017657 N 0.000
OLONG_022621 Oryza longistaminata OLONG_022621 N 0.000
OMERI08G10040 Oryza meridionalis OMERI08G10040 N 0.000
OMERI09G03860 Oryza meridionalis OMERI09G03860 N 0.000
ONIVA08G08480 Oryza nivara ONIVA08G08480 N 0.000
ONIVA08G12360 Oryza nivara ONIVA08G12360 N 0.000
OPUNC08G10970 Oryza punctata OPUNC08G10970 N 0.000
OPUNC09G04190 Oryza punctata OPUNC09G04190 N 0.000
ORGLA03G0189000 Oryza glaberrima ORGLA03G0189000 N 0.000
ORGLA08G0106400 Oryza glaberrima ORGLA08G0106400 N 0.000
ORUFI08G13590 Oryza rufipogon ORUFI08G13590 N 0.000
ORUFI09G05300 Oryza rufipogon ORUFI09G05300 N 0.000
OS09G0306400 Oryza sativa OS09G0306400 N 0.000
Pavir.Ba02250 Panicum virgatum Pavir.Ba02250 N 0.000
Pavir.Bb01636 Panicum virgatum Pavir.Bb01636 N 0.000
Sb02g020760 Sorghum bicolor Sb02g020760 N 0.000
Si031353m.g Setaria italica Si031353m.g N 0.000
Traes_5AL_D9A4DFF71 Triticum aestivum Traes_5AL_D9A4DFF71 N 0.000
Traes_5DL_67A38E9B7 Triticum aestivum Traes_5DL_67A38E9B7 N 0.000
TRIUR3_05083 Triticum urartu TRIUR3_05083 N 0.000