Cagra.0007s0045 (Capsella grandiflora)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cagra.0007s0045 T344723_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.976 0.782
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.975 0.773
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.957 0.580
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.957 0.580
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.957 0.580
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.944 0.588
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.896 0.412
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.886 0.420
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.884 0.412
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.871 0.395
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.851 0.361
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.849 0.387
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.847 0.403
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.847 0.403
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0007s0045.1.p TCP 42 221

Links

Other TCP family TFs
Other Capsella grandiflora TFs

418 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TVAG_001730 Trichomonas vaginalis TVAG_001730 N
TVAG_003790 Trichomonas vaginalis TVAG_003790 N
TVAG_009130 Trichomonas vaginalis TVAG_009130 N
TVAG_019620 Trichomonas vaginalis TVAG_019620 N
TVAG_022050 Trichomonas vaginalis TVAG_022050 N
TVAG_031630 Trichomonas vaginalis TVAG_031630 N
TVAG_032260 Trichomonas vaginalis TVAG_032260 N
TVAG_039590 Trichomonas vaginalis TVAG_039590 N
TVAG_051900 Trichomonas vaginalis TVAG_051900 N
TVAG_055380 Trichomonas vaginalis TVAG_055380 N
TVAG_066150 Trichomonas vaginalis TVAG_066150 N
TVAG_072810 Trichomonas vaginalis TVAG_072810 N
TVAG_072940 Trichomonas vaginalis TVAG_072940 N
TVAG_082490 Trichomonas vaginalis TVAG_082490 N
TVAG_084000 Trichomonas vaginalis TVAG_084000 N
TVAG_085170 Trichomonas vaginalis TVAG_085170 N
TVAG_114620 Trichomonas vaginalis TVAG_114620 N
TVAG_115140 Trichomonas vaginalis TVAG_115140 N
TVAG_125900 Trichomonas vaginalis TVAG_125900 N
TVAG_132960 Trichomonas vaginalis TVAG_132960 N
TVAG_143010 Trichomonas vaginalis TVAG_143010 N
TVAG_159700 Trichomonas vaginalis TVAG_159700 N
TVAG_164060 Trichomonas vaginalis TVAG_164060 N
TVAG_176590 Trichomonas vaginalis TVAG_176590 N
TVAG_184700 Trichomonas vaginalis TVAG_184700 N
TVAG_193570 Trichomonas vaginalis TVAG_193570 N
TVAG_194490 Trichomonas vaginalis TVAG_194490 N
TVAG_207030 Trichomonas vaginalis TVAG_207030 N
TVAG_208350 Trichomonas vaginalis TVAG_208350 N
TVAG_217190 Trichomonas vaginalis TVAG_217190 N
TVAG_218470 Trichomonas vaginalis TVAG_218470 N
TVAG_222670 Trichomonas vaginalis TVAG_222670 N
TVAG_225500 Trichomonas vaginalis TVAG_225500 N
TVAG_232930 Trichomonas vaginalis TVAG_232930 N
TVAG_245670 Trichomonas vaginalis TVAG_245670 N
TVAG_267240 Trichomonas vaginalis TVAG_267240 N
TVAG_270150 Trichomonas vaginalis TVAG_270150 N
TVAG_274450 Trichomonas vaginalis TVAG_274450 N
TVAG_282400 Trichomonas vaginalis TVAG_282400 N
TVAG_286640 Trichomonas vaginalis TVAG_286640 N
TVAG_287170 Trichomonas vaginalis TVAG_287170 N
TVAG_290290 Trichomonas vaginalis TVAG_290290 N
TVAG_296430 Trichomonas vaginalis TVAG_296430 N
TVAG_298740 Trichomonas vaginalis TVAG_298740 N
TVAG_314210 Trichomonas vaginalis TVAG_314210 N
TVAG_323180 Trichomonas vaginalis TVAG_323180 N
TVAG_341960 Trichomonas vaginalis TVAG_341960 N
TVAG_345660 Trichomonas vaginalis TVAG_345660 N
TVAG_345950 Trichomonas vaginalis TVAG_345950 N
TVAG_347580 Trichomonas vaginalis TVAG_347580 N
TVAG_353570 Trichomonas vaginalis TVAG_353570 N
TVAG_357040 Trichomonas vaginalis TVAG_357040 N
TVAG_359360 Trichomonas vaginalis TVAG_359360 N
TVAG_365130 Trichomonas vaginalis TVAG_365130 N
TVAG_376980 Trichomonas vaginalis TVAG_376980 N
TVAG_388950 Trichomonas vaginalis TVAG_388950 N
TVAG_415680 Trichomonas vaginalis TVAG_415680 N
TVAG_422330 Trichomonas vaginalis TVAG_422330 N
TVAG_427180 Trichomonas vaginalis TVAG_427180 N
TVAG_439560 Trichomonas vaginalis TVAG_439560 N
TVAG_440640 Trichomonas vaginalis TVAG_440640 N
TVAG_442490 Trichomonas vaginalis TVAG_442490 N
TVAG_453000 Trichomonas vaginalis TVAG_453000 N
TVAG_457930 Trichomonas vaginalis TVAG_457930 N
TVAG_471970 Trichomonas vaginalis TVAG_471970 N
TVAG_473020 Trichomonas vaginalis TVAG_473020 N
TVAG_486380 Trichomonas vaginalis TVAG_486380 N
TVAG_504700 Trichomonas vaginalis TVAG_504700 N
TVAG_506740 Trichomonas vaginalis TVAG_506740 N
TVAG_507340 Trichomonas vaginalis TVAG_507340 N
TVAG_509250 Trichomonas vaginalis TVAG_509250 N
TVAG_517530 Trichomonas vaginalis TVAG_517530 N
TVAG_528340 Trichomonas vaginalis TVAG_528340 N
TVAG_531390 Trichomonas vaginalis TVAG_531390 N
TVAG_534630 Trichomonas vaginalis TVAG_534630 N
TVAG_539860 Trichomonas vaginalis TVAG_539860 N
TVAG_543030 Trichomonas vaginalis TVAG_543030 N
TVAG_546580 Trichomonas vaginalis TVAG_546580 N
TVAG_546620 Trichomonas vaginalis TVAG_546620 N
TVAG_550050 Trichomonas vaginalis TVAG_550050 N
TVAG_550550 Trichomonas vaginalis TVAG_550550 N
TVAG_551700 Trichomonas vaginalis TVAG_551700 N
TVAG_552020 Trichomonas vaginalis TVAG_552020 N
TVAG_553880 Trichomonas vaginalis TVAG_553880 N
TVAG_562210 Trichomonas vaginalis TVAG_562210 N
TVAG_562780 Trichomonas vaginalis TVAG_562780 N
TVAG_566130 Trichomonas vaginalis TVAG_566130 N
TVAG_566860 Trichomonas vaginalis TVAG_566860 N
TVAG_568350 Trichomonas vaginalis TVAG_568350 N
TVAG_572200 Trichomonas vaginalis TVAG_572200 N
TVAG_574820 Trichomonas vaginalis TVAG_574820 N
TVAG_579950 Trichomonas vaginalis TVAG_579950 N
TVAG_582290 Trichomonas vaginalis TVAG_582290 N
TVAG_582310 Trichomonas vaginalis TVAG_582310 N
TVAG_584820 Trichomonas vaginalis TVAG_584820 N
TVAG_584920 Trichomonas vaginalis TVAG_584920 N
TVAG_603130 Trichomonas vaginalis TVAG_603130 N
TVAG_603880 Trichomonas vaginalis TVAG_603880 N