Ciclev10011887m.g (Citrus clementina)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Ciclev10011887m.g T344777_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.951 0.512
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.932 0.488
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.926 0.472
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.896 0.465
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.896 0.465
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.887 0.441
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.880 0.417
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.880 0.417
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.876 0.386
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.860 0.378
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.859 0.402
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.859 0.402
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.856 0.370
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.841 0.370
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.841 0.370
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.841 0.370
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10011887m TCP 61 229

Links

Other TCP family TFs
Other Citrus clementina TFs

371 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0 I 0.000
BTMF_0000429201 Brugia timori BTMF_0000429201 I 0.000
CGOC_0000554601 Cylicostephanus goldi CGOC_0000554601 N 0.000
D915_08967 Fasciola hepatica D915_08967 I 0.000
DICVIV_03671 Dictyocaulus viviparus DICVIV_03671 N 0.000
ENSVPAG00000005031 Vicugna pacos ENSVPAG00000005031 I 0.000
GPLIN_001569000 Globodera pallida GPLIN_001569000 I 0.000
Hba_17078 Heterorhabditis bacteriophora Hba_17078 N 0.000
HCOI00218000 Haemonchus contortus HCOI00218000 N 0.000
HCOI01422600 Haemonchus contortus HCOI01422600 N 0.000
HPLM_0000748001 Haemonchus placei HPLM_0000748001 N 0.000
NECAME_17145 Necator americanus NECAME_17145 I 0.000
OESDEN_00868 Oesophagostomum dentatum OESDEN_00868 N 0.000
RBPJ Homo sapiens ENSG00000168214 D 0.000
scaffold595-EXSNAP2012.9 Pristionchus exspectatus scaffold595-EXSNAP2012.9 I 0.000
SCUD_0000326701 Schistosoma curassoni SCUD_0000326701 I 0.000
Sjc_0108400 Schistosoma japonicum Sjc_0108400 I 0.000
SMRZ_0000802101 Schistosoma margrebowiei SMRZ_0000802101 I 0.000
SMTD_0001089601 Schistosoma mattheei SMTD_0001089601 I 0.000
SMUV_0001013801 Syphacia muris SMUV_0001013801 I 0.000
TRE_0000568701 Trichobilharzia regenti TRE_0000568701 I 0.000