Gorai.001G076700 (Gossypium raimondii)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Gorai.001G076700 T344849_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.950 0.546
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.949 0.529
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.945 0.479
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.917 0.487
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.917 0.487
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.900 0.445
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.900 0.445
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.888 0.403
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.876 0.387
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.854 0.361
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.844 0.353
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.842 0.336
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.842 0.336
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.840 0.336
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.840 0.336
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.840 0.336
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G076700.1 TCP 43 161
Gorai.001G076700.2 TCP 43 161
Gorai.001G076700.3 TCP 43 161

Links

Other TCP family TFs
Other Gossypium raimondii TFs

401 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB10294.1 Alternaria brassicicola AB10294.1 I
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BGHDH14_bgh03873 Blumeria graminis BGHDH14_bgh03873 I
COCC4DRAFT_20732 Bipolaris maydis COCC4DRAFT_20732 I
COCCADRAFT_39951 Bipolaris zeicola COCCADRAFT_39951 I
COCMIDRAFT_35015 Bipolaris oryzae COCMIDRAFT_35015 I
COCSADRAFT_103706 Bipolaris sorokiniana COCSADRAFT_103706 I
COCVIDRAFT_32043 Bipolaris victoriae COCVIDRAFT_32043 I
CTHT_0009920 Chaetomium thermophilum CTHT_0009920 I
DRE_02170 Drechslerella stenobrocha DRE_02170 I
estExt_fgenesh1_pg.C_60367 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_60367 I
estExt_Genewise1.C_21713 Neurospora discreta estExt_Genewise1.C_21713 I
EV44_g5959 Erysiphe necator EV44_g5959 I
fgenesh1_pg.sca_1_chr1_3_0000074 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0000074 I
H072_5364 Dactylellina haptotyla H072_5364 I
M7I_1571 Glarea lozoyensis M7I_1571 I
MAC_07140 Metarhizium acridum MAC_07140 I
MAJ_04550 Metarhizium majus MAJ_04550 I
MANI_013624 Metarhizium anisopliae MANI_013624 I
MBR_06038 Metarhizium brunneum MBR_06038 I
MGU_06439 Metarhizium guizhouense MGU_06439 I
NCU02724 Neurospora crassa NCU02724 D
NechaG74463 Fusarium solani NechaG74463 I
NEUTE1DRAFT_126349 Neurospora tetrasperma NEUTE1DRAFT_126349 I
OIDMADRAFT_121959 Oidiodendron maius OIDMADRAFT_121959 I
PTRG_11389 Pyrenophora triticirepentis PTRG_11389 I
PTT_08645 Pyrenophora teres PTT_08645 I
S40285_05978 Stachybotrys chlorohalonata S40285_05978 I
S40288_06808 Stachybotrys chartarum S40288_06808 I
SBOR_9785 Sclerotinia borealis SBOR_9785 I
SETTUDRAFT_141598 Setosphaeria turcica SETTUDRAFT_141598 I
SMAC_04294 Sordaria macrospora SMAC_04294 I
SS1G_14446 Sclerotinia sclerotiorum SS1G_14446 I
UV8b_2201 Ustilaginoidea virens UV8b_2201 I
X797_005794 Metarhizium robertsii X797_005794 I