Pavir.J36433 (Panicum virgatum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pavir.J36433 T345025_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.922 0.536
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.918 0.484
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.918 0.484
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.903 0.333
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.903 0.333
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.903 0.333
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.899 0.373
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.897 0.333
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.894 0.333
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.885 0.373
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.878 0.314
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.870 0.301
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.866 0.314
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.866 0.314
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.834 0.294
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.834 0.294
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J36433.1.p TCP 9 163

Links

Other TCP family TFs
Other Panicum virgatum TFs

437 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_05906 Capronia coronata A1O1_05906 N 0.000
A1O3_01091 Capronia epimyces A1O3_01091 N 0.000
A1O9_05997 Exophiala aquamarina A1O9_05997 N 0.000
BDDG_02685 Blastomyces dermatitidis BDDG_02685 N 0.000
CADAFLAG00003696 Aspergillus flavus CADAFLAG00003696 N 0.000
CADAORAG00006116 Aspergillus oryzae CADAORAG00006116 N 0.000
CH063_02579 Colletotrichum higginsianum CH063_02579 N 0.000
Cob_01259 Colletotrichum orbiculare Cob_01259 N 0.000
CPC735_025030 Coccidioides posadasii CPC735_025030 N 0.000
CSUB01_03903 Colletotrichum sublineola CSUB01_03903 N 0.000
fgenesh1_pg.sca_8_chr1_1_0000361 Nectria haematococca fgenesh1_pg.sca_8_chr1_1_0000361 N 0.000
FGRRES_01428 Fusarium graminearum FGRRES_01428 N 0.000
FPSE_08525 Fusarium pseudograminearum FPSE_08525 N 0.000
GLRG_08121 Colletotrichum graminicola GLRG_08121 N 0.000
HMPREF1120_02843 Exophiala dermatitidis HMPREF1120_02843 N 0.000
M437DRAFT_36351 Aureobasidium melanogenum M437DRAFT_36351 N 0.000
M438DRAFT_359672 Aureobasidium pullulans M438DRAFT_359672 N 0.000
MAJ_00529 Metarhizium majus MAJ_00529 N 0.000
MANI_117353 Metarhizium anisopliae MANI_117353 N 0.000
MBR_02139 Metarhizium brunneum MBR_02139 N 0.000
MGU_04466 Metarhizium guizhouense MGU_04466 N 0.000
MPH_04521 Macrophomina phaseolina MPH_04521 N 0.000
PAAG_00562 Paracoccidioides sp lutzii PAAG_00562 N 0.000
PABG_03554 Paracoccidioides brasiliensis PABG_03554 N 0.000
PMAA_067510 Talaromyces marneffei PMAA_067510 N 0.000
PMAA_067510 Penicillium marneffei PMAA_067510 N 0.000
PV06_03512 Exophiala oligosperma PV06_03512 N 0.000
PV08_05909 Exophiala spinifera PV08_05909 N 0.000
PV10_08806 Exophiala mesophila PV10_08806 N 0.000
PV11_08152 Exophiala sideris PV11_08152 N 0.000
UCRNP2_8766 Neofusicoccum parvum UCRNP2_8766 N 0.000
UREG_04452 Uncinocarpus reesii UREG_04452 N 0.000
V499_01463 Pseudogymnoascus pannorum V499_01463 N 0.000
VDAG_03951 Verticillium dahliae VDAG_03951 N 0.000
X797_000127 Metarhizium robertsii X797_000127 N 0.000
Z518_04390 Rhinocladiella mackenziei Z518_04390 N 0.000