Thhalv10008175m.g (Eutrema salsugineum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Thhalv10008175m.g T345081_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP24
M02499_2.00 		Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN		 PBM
Weirauch et al.(2014)
pTH7337 		0.962 0.795
TCP24
M07272_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP24_colamp_a 		0.962 0.795
TCP24
M07273_2.00 		Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
TCP24_col 		0.962 0.795
TCP24
M02506_2.00 		Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN		 PBM
Weirauch et al.(2014)
pTH9227 		0.961 0.804
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10008175m TCP 50 132
Thhalv10008175m TCP 120 154

Links

Other TCP family TFs
Other Eutrema salsugineum TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACLA_008320 Aspergillus clavatus CADACLAG00000505 N
ACRE_083930 Acremonium chrysogenum ACRE_083930 N
CSUB01_04340 Colletotrichum sublineola CSUB01_04340 N
estExt_Genewise1Plus.C_sca_12_chr5_2_00169 Nectria haematococca estExt_Genewise1Plus.C_sca_12_chr5_2_00169 N
NechaG68940 Fusarium solani NechaG68940 N
PODANS_7_5580 Podospora anserina PODANS_7_5580 N
PV04_09739 Capronia semiimmersa PV04_09739 N
SBOR_4351 Sclerotinia borealis SBOR_4351 N
VDAG_09064 Verticillium dahliae VDAG_09064 N