TCX4 (Arabidopsis thaliana)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 AT3G04850 T345178_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCX4
M02521_2.00		 Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.776
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.776
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.776
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.776
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.763
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.763
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.763
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.750
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.737
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.592
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.592
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.579
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.566
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.566
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.566
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.566
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.566
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.553
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.553
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.553
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.539
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.539
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.539
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.539
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.526
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.526
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.474
For this family, TFs with SR scores > 0.660 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02521_2.00 TCR/CxC 53 90
M02521_2.00 TCR/CxC 139 176

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G04850.1 TCR/CxC 452 489
AT3G04850.1 TCR/CxC 538 575

Links

Other TCR/CxC family TFs
Other Arabidopsis thaliana TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
1703276C Xenopus laevis 1703276C N
1703276D Xenopus laevis 1703276D I
ACHR001571 Anopheles christyi ACHR001571 N
ACHR008505 Anopheles christyi ACHR008505 N
ACOM036085 Anopheles coluzzii ACOM036085 N
ACUA020431 Anopheles culicifacies ACUA020431 N
AEPI010384 Anopheles epiroticus AEPI010384 N
AMAM004568 Anopheles maculatus AMAM004568 N
AMAM018190 Anopheles maculatus AMAM018190 I
AMIN002393 Anopheles minimus AMIN002393 N
ANCCAN_12383 Ancylostoma caninum ANCCAN_12383 N
ARX Callithrix jacchus ENSCJAG00000004737 N
ASIM_0000060401 Anisakis simplex ASIM_0000060401 N
ASIM_0001450801 Anisakis simplex ASIM_0001450801 N
ASIS018446 Anopheles sinensis ASIS018446 N
BGIBMGA008456 Bombyx mori BGIBMGA008456 I
Brh_R008378 Buceros rhinoceros Brh_R008378 I
CAA41845 Xenopus laevis CAA41845 N
CAA41846 Xenopus laevis CAA41846 I
Cmyd_10015546 Chelonia mydas Cmyd_10015546 N
csin111311 Clonorchis sinensis csin111311 I
D915_01085 Fasciola hepatica D915_01085 I
DLX1 Gallus gallus ENSGALG00000018439 I
DME_0000045101 Dracunculus medinensis DME_0000045101 N
ECPE_0000850801 Echinostoma caproni ECPE_0000850801 N
ECPE_0001253901 Echinostoma caproni ECPE_0001253901 I
ENSCAFG00000028868 Canis familiaris ENSCAFG00000028868 I
ENSOANG00000007774 Ornithorhynchus anatinus ENSOANG00000007774 N
ENSPMAG00000008178 Petromyzon marinus ENSPMAG00000008178 N
ENSPSIG00000017365 Pelodiscus sinensis ENSPSIG00000017365 N
ENSVPAG00000010060 Vicugna pacos ENSVPAG00000010060 I
HelroG127967 Helobdella robusta HelroG127967 N
HelroG147207 Helobdella robusta HelroG147207 N
HPBE_0002330201 Heligmosomoides bakeri HPBE_0002330201 N
L798_03158 Zootermopsis nevadensis L798_03158 N
MESCA011418 Megaselia scalaris MESCA011418 N
MhA1_Contig26.frz3.gene32 Meloidogyne hapla MhA1_Contig26.frz3.gene32 N
Minc16530 Meloidogyne incognita Minc16530 N
NEMVEDRAFT_v1g128275 Nematostella vectensis NEMVEDRAFT_v1g128275 N
NEMVEDRAFT_v1g128296 Nematostella vectensis NEMVEDRAFT_v1g128296 N
nOo.2.0.1.g11854 Onchocerca ochengi nOo.2.0.1.g11854 N
Ogr05500 Ophisaurus gracilis Ogr05500 N
OLONG_001916 Oryza longistaminata OLONG_001916 N
PXEA_0002744701 Protopolystoma xenopodis PXEA_0002744701 N
RAX2 Microcebus murinus ENSMICG00000014768 I
RPRC010976 Rhodnius prolixus RPRC010976 I
Sjc_0079680 Schistosoma japonicum Sjc_0079680 I
SMAR006775 Strigamia maritima SMAR006775 N
Smp_053520 Schistosoma mansoni Smp_053520 N
Smp_142560 Schistosoma mansoni Smp_142560 I
SMRZ_0000797601 Schistosoma margrebowiei SMRZ_0000797601 I
snap_masked-nMf.1.1.scaf05453-processed-gene-0.4 Meloidogyne floridensis snap_masked-nMf.1.1.scaf05453-processed-gene-0.4 N
SPER_0002183801 Spirometra erinaceieuropaei SPER_0002183801 N
SPER_0003632001 Spirometra erinaceieuropaei SPER_0003632001 N
SPER_0003833401 Spirometra erinaceieuropaei SPER_0003833401 N
SROB_0000845501 Schistosoma rodhaini SROB_0000845501 N
SSLN_0000226701 Schistocephalus solidus SSLN_0000226701 N
SSLN_0000633001 Schistocephalus solidus SSLN_0000633001 N
SVUK_0001507101 Strongylus vulgaris SVUK_0001507101 N
T265_08234 Opisthorchis viverrini T265_08234 I
TCNE_0000266601 Toxocara canis TCNE_0000266601 N
TCNE_0000939301 Toxocara canis TCNE_0000939301 N
TRE_0000179101 Trichobilharzia regenti TRE_0000179101 N