CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra036900 *(Brassica rapa)* TCR/CxC
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03638 (TCR)	IPR005172	Bra036900	T345236_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCX2 M07300_2.00	Arabidopsis thaliana	WWTYVAAATTYRAAW	WTTYRAATTTBRAWW	Dap-seq OMalley et al.(2016) TCX2_col_a	0.672	0.987
TCX2 M07301_2.00	Arabidopsis thaliana	TTYVAAATTYRAAW	WTTYRAATTTBRAA	Dap-seq OMalley et al.(2016) TCX2_colamp_a	0.672	0.987
TCX3 M01087_2.00	Arabidopsis thaliana	NNDTTYAAAH	DTTTRAAHNN	PBM Sullivan et al.(2014) pTH7218	0.672	0.961
TCX3 M02522_2.00	Arabidopsis thaliana	WTTYAAAH	DTTTRAAW	PBM Weirauch et al.(2014) pTH7421	0.672	0.961
TCX3 M07297_2.00	Arabidopsis thaliana	DWTTYRAAWTTBAAW	WTTVAAATTYRAAWH	Dap-seq OMalley et al.(2016) SOL1_colamp_a	0.672	0.961
TCX3 M07298_2.00	Arabidopsis thaliana	WTWWAAAATTYAAAW	WTTTRAATTTTWWAW	Dap-seq OMalley et al.(2016) SOL1_col	0.672	0.961
TSO1 M07299_2.00	Arabidopsis thaliana	WWWTWDAAATTYAAA	TTTRAATTTHWAWWW	Dap-seq OMalley et al.(2016) TSO1_col_a	0.672	0.921
PK22848.1 M02532_2.00	Cannabis sativa	NNNYNAAATTTNN	NNAAATTTNRNNN	PBM Weirauch et al.(2014) pTH9724	0.672	0.908
BRADI1G55710 M02525_2.00	Brachypodium distachyon	NVTBYRVABN	NVTBYRVABN	PBM Weirauch et al.(2014) pTH9241	0.672	0.868
TCX4 M02521_2.00	Arabidopsis thaliana	DWTTYRAAWH	DWTTYRAAWH	PBM Weirauch et al.(2014) pTH7573	0.672	0.776
fgenesh1_pg.C_Chr_09.0001000301 M02533_2.00	Ostreococcus tauri	NNNNNRHNN	NNDYNNNNN	PBM Weirauch et al.(2014) pTH9457	0.672	0.671
AT2G20110 M02520_2.00	Arabidopsis thaliana	DTTTAAAH	DTTTAAAH	PBM Weirauch et al.(2014) pTH7914	0.672	0.632
TCX5 M02523_2.00	Arabidopsis thaliana	NRTTCAAAYN	NRTTTGAAYN	PBM Weirauch et al.(2014) pTH8164	0.672	0.632
AT5G25790 M01319_2.00	Arabidopsis thaliana	NHYRAAHN	NDTTYRDN	PBM Lambert et al.(2019) pTH11533	0.672	0.632
fgeneshCV_pg.C_scaffold_18000164 M02534_2.00	Chlorella vulgaris	NNNNDYRAAH	DTTYRHNNNN	PBM Weirauch et al.(2014) pTH9252	0.672	0.632
AT2G20110 M07295_2.00	Arabidopsis thaliana	WWHWAADATTYAAAW	WTTTRAATHTTWDWW	Dap-seq OMalley et al.(2016) AT2G20110_col_a	0.672	0.632
AT2G20110 M07296_2.00	Arabidopsis thaliana	WWHNAAATTYAAAHN	NDTTTRAATTTNDWW	Dap-seq OMalley et al.(2016) AT2G20110_colamp_a	0.672	0.632
gw1.20.00.89.1 M02535_2.00	Ostreococcus tauri	WNYWBVWRNW	WNYWBVWRNW	PBM Weirauch et al.(2014) pTH9647	0.672	0.579
lin54 M02526_2.00	Danio rerio	NHTYRAAH	DTTYRADN	PBM Weirauch et al.(2014) pTH8399	0.672	0.566
ENSTSYG00000005291 M02528_2.00	Tarsius syrichta	NNWDHDHWNN	NNWDHDHWNN	PBM Weirauch et al.(2014) pTH9366	0.672	0.566
XP_002124866.1 M01321_2.00	Ciona intestinalis	NDTTYRAAN	NTTYRAAHN	PBM Lambert et al.(2019) pTH9835	0.672	0.566
LIN54 M02527_2.00	Gallus gallus	NRTTYAAAH	DTTTRAAYN	PBM Weirauch et al.(2014) pTH8566	0.672	0.553
GE12548 M02529_2.00	Drosophila yakuba	DTTYAAAY	RTTTRAAH	PBM Weirauch et al.(2014) pTH9262	0.672	0.553
GSPATT00010696001 M02530_2.00	Paramecium tetraurelia	NNBRAAHN	NDTTYVNN	PBM Weirauch et al.(2014) pTH8720	0.672	0.553
SPU_025306 M02531_2.00	Strongylocentrotus purpuratus	NNNNWYRAAH	DTTYRWNNNN	PBM Weirauch et al.(2014) pTH9286	0.672	0.553
PK27683.1 M01322_2.00	Cannabis sativa	NDTTYAAAH	DTTTRAAHN	PBM Lambert et al.(2019) pTH11347	0.672	0.553
BGIBMGA008956 M02524_2.00	Bombyx mori	AATTTAAAW	WTTTAAATT	PBM Weirauch et al.(2014) pTH9238	0.672	0.526
NEMVEDRAFT_v1g111410 M01320_2.00	Nematostella vectensis	NNNNYRWRN	NYWYRNNNN	PBM Lambert et al.(2019) pTH9771	0.672	0.526
For this family, TFs with SR scores > 0.660* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bra036900.1-P	TCR/CxC	359	396	CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP
Bra036900.1-P	TCR/CxC	445	482	KRGCNCKKSNCLKKYCECFQGGVGCSINCRCEGCKNAF

Links
Other TCR/CxC family TFs
Other *Brassica rapa* TFs

1213 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aan_R003941	Calypte anna	Aan_R003941	N
Afo_R009964	Aptenodytes forsteri	Afo_R009964	N
Alligator_sinensis_CCG007839.1	Alligator sinensis	Alligator_sinensis_CCG007839.1	N
Brh_R009980	Buceros rhinoceros	Brh_R009980	N
Cmyd_10010856	Chelonia mydas	Cmyd_10010856	N
ENSAMEG00000005726	Ailuropoda melanoleuca	ENSAMEG00000005726	N
ENSAPLG00000015698	Anas platyrhynchos	ENSAPLG00000015698	N
ENSFALG00000006051	Ficedula albicollis	ENSFALG00000006051	N
ENSGALG00000016078	Gallus gallus	ENSGALG00000016078	N
ENSMPUG00000005985	Mustela putorius furo	ENSMPUG00000005985	N
ENSNLEG00000003937	Nomascus leucogenys	ENSNLEG00000003937	N
ENSOARG00000015495	Ovis aries	ENSOARG00000015495	N
ENSP00000384179-D1	Bos grunniens	ENSP00000384179-D1	N
ENSPPYG00000018814	Pongo abelii	ENSPPYG00000018814	N
ENSPSIG00000004514	Pelodiscus sinensis	ENSPSIG00000004514	N
ENSSHAG00000016982	Sarcophilus harrisii	ENSSHAG00000016982	N
ENSSTOG00000020729	Ictidomys tridecemlineatus	ENSSTOG00000020729	N
ENSTSYG00000003772	Tarsius syrichta	ENSTSYG00000003772	N
Gfo_R006037	Geospiza fortis	Gfo_R006037	N
Myotis_brandtii_ZFPM2_10006936	Myotis brandtii	Myotis_brandtii_ZFPM2_10006936	N
Tal_R002301	Tyto alba	Tal_R002301	N
ZFPM2	Sus scrofa	ENSSSCG00000006038	N
ZFPM2	Anolis carolinensis	ENSACAG00000009858	N
ZFPM2	Bos taurus	ENSBTAG00000001649	N
ZFPM2	Canis familiaris	ENSCAFG00000000678	N
ZFPM2	Choloepus hoffmanni	ENSCHOG00000010127	N
ZFPM2	Callithrix jacchus	ENSCJAG00000006642	N
ZFPM2	Dasypus novemcinctus	ENSDNOG00000045385	N
Zfpm2	Dipodomys ordii	ENSDORG00000002573	N
ZFPM2	Equus caballus	ENSECAG00000020172	N
ZFPM2	Echinops telfairi	ENSETEG00000002635	N
ZFPM2	Tursiops truncatus	ENSTTRG00000004168	N
ZFPM2	Felis catus	ENSFCAG00000009078	N
ZFPM2	Taeniopygia guttata	ENSTGUG00000012190	N
ZFPM2	Homo sapiens	ENSG00000169946	N
ZFPM2	Monodelphis domestica	ENSMODG00000005359	N
ZFPM2	Gorilla gorilla	ENSGGOG00000011645	N
Zfpm2	Rattus norvegicus	ENSRNOG00000004109	N
ZFPM2	Pteropus vampyrus	ENSPVAG00000016508	N
ZFPM2	Pan troglodytes	ENSPTRG00000020498	N
ZFPM2	Loxodonta africana	ENSLAFG00000010342	N
ZFPM2	Meleagris gallopavo	ENSMGAG00000012374	N
ZFPM2	Otolemur garnettii	ENSOGAG00000027431	N
ZFPM2	Oryctolagus cuniculus	ENSOCUG00000005930	N
ZFPM2	Microcebus murinus	ENSMICG00000001099	N
ZFPM2	Ornithorhynchus anatinus	ENSOANG00000011618	N
ZFPM2	Myotis lucifugus	ENSMLUG00000010148	N
Zfpm2	Mus musculus	ENSMUSG00000022306	N

Bra036900 (Brassica rapa) TCR/CxC

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1213 Related TFs

Bra036900 **(Brassica rapa)
TCR/CxC**