LPERR12G15290 (Leersia perrieri)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 LPERR12G15290 T345532_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.828
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.793
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.793
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.776
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.776
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.776
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.776
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.759
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.741
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.724
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.621
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.552
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.500
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.500
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.500
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.483
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.483
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.483
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.483
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.483
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.483
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.483
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.483
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.483
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.466
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.466
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.448
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.448
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LPERR12G15290.1 TCR/CxC 455 492
LPERR12G15290.1 TCR/CxC 526 545

Links

Other TCR/CxC family TFs
Other Leersia perrieri TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29994.m000464 Ricinus communis 29994.m000464 N
AMTR_s00011p00256770 Amborella trichopoda AMTR_s00011p00256770 N
Aquca_030_00311 Aquilegia coerulea Aquca_030_00311 N
BGIOSGA029268 Oryza indica BGIOSGA029268 N
BRADI4G38000 Brachypodium distachyon BRADI4G38000 N
chr4.CM0042.1850.nd Lotus japonicus chr4.CM0042.1850.nd N
Ciclev10015448m.g Citrus clementina Ciclev10015448m.g N
Cla010033 Citrullus lanatus Cla010033 N
Cucsa.048660 Cucumis sativus Cucsa.048660 N
evm.TU.supercontig_30.114 Carica papaya evm.TU.supercontig_30.114 N
F775_19799 Aegilops tauschii F775_19799 N
gene19969-v1.0-hybrid Fragaria vesca gene19969-v1.0-hybrid N
GLYMA05G34280 Glycine max GLYMA05G34280 N
GLYMA08G05390 Glycine max GLYMA08G05390 N
Gorai.008G050900 Gossypium raimondii Gorai.008G050900 N
GSMUA_Achr10G20960_001 Musa acuminata GSMUA_Achr10G20960_001 N
GSMUA_Achr11G13680_001 Musa acuminata GSMUA_Achr11G13680_001 N
GSMUA_Achr11G18180_001 Musa acuminata GSMUA_Achr11G18180_001 N
LPERR09G15520 Leersia perrieri LPERR09G15520 N
Lus10036234.g Linum usitatissimum Lus10036234.g N
Lus10038373.g Linum usitatissimum Lus10038373.g N
mgf011479m Mimulus guttatus mgf011479m N
mgf015174m Mimulus guttatus mgf015174m N
mgf015709m Mimulus guttatus mgf015709m N
MLOC_57580 Hordeum vulgare MLOC_57580 N
OB09G26240 Oryza brachyantha OB09G26240 N
OBART09G19610 Oryza barthii OBART09G19610 N
ONIVA09G20740 Oryza nivara ONIVA09G20740 N
orange1.1g015397m.g Citrus sinensis orange1.1g015397m.g N
ORGLA09G0158300 Oryza glaberrima ORGLA09G0158300 N
ORUFI10G16430 Oryza rufipogon ORUFI10G16430 N
OS09G0560900 Oryza sativa OS09G0560900 N
PGSC0003DMG401017733 Solanum tuberosum PGSC0003DMG401017733 N
Pm010813 Prunus mume Pm010813 N
POPTR_0001s16080 Populus trichocarpa POPTR_0001s16080 N
POPTR_0003s07180 Populus trichocarpa POPTR_0003s07180 N
SapurV1A.0104s0210 Salix purpurea SapurV1A.0104s0210 N
SapurV1A.0273s0180 Salix purpurea SapurV1A.0273s0180 N
SapurV1A.3784s0010 Salix purpurea SapurV1A.3784s0010 N
Solyc02g081620.2 Solanum lycopersicum Solyc02g081620.2 N
SUF4 Vitis vinifera VIT_01s0011g01240 N
TCM_005999 Theobroma cacao TCM_005999 N
Traes_5BL_6688D6ECE Triticum aestivum Traes_5BL_6688D6ECE N
TRIUR3_07451 Triticum urartu TRIUR3_07451 N