CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OMERI03G24280 *(Oryza meridionalis)* TCR/CxC
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03638 (TCR)	IPR005172	OMERI03G24280	T345625_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
BRADI1G55710 M02525_2.00	Brachypodium distachyon	NVTBYRVABN	NVTBYRVABN	PBM Weirauch et al.(2014) pTH9241	0.672	0.237
TSO1 M07299_2.00	Arabidopsis thaliana	WWWTWDAAATTYAAA	TTTRAATTTHWAWWW	Dap-seq OMalley et al.(2016) TSO1_col_a	0.672	0.227
PK22848.1 M02532_2.00	Cannabis sativa	NNNYNAAATTTNN	NNAAATTTNRNNN	PBM Weirauch et al.(2014) pTH9724	0.672	0.224
TCX2 M07300_2.00	Arabidopsis thaliana	WWTYVAAATTYRAAW	WTTYRAATTTBRAWW	Dap-seq OMalley et al.(2016) TCX2_col_a	0.672	0.224
TCX2 M07301_2.00	Arabidopsis thaliana	TTYVAAATTYRAAW	WTTYRAATTTBRAA	Dap-seq OMalley et al.(2016) TCX2_colamp_a	0.672	0.224
TCX3 M01087_2.00	Arabidopsis thaliana	NNDTTYAAAH	DTTTRAAHNN	PBM Sullivan et al.(2014) pTH7218	0.672	0.211
TCX3 M02522_2.00	Arabidopsis thaliana	WTTYAAAH	DTTTRAAW	PBM Weirauch et al.(2014) pTH7421	0.672	0.211
TCX3 M07297_2.00	Arabidopsis thaliana	DWTTYRAAWTTBAAW	WTTVAAATTYRAAWH	Dap-seq OMalley et al.(2016) SOL1_colamp_a	0.672	0.211
TCX3 M07298_2.00	Arabidopsis thaliana	WTWWAAAATTYAAAW	WTTTRAATTTTWWAW	Dap-seq OMalley et al.(2016) SOL1_col	0.672	0.211
AT2G20110 M02520_2.00	Arabidopsis thaliana	DTTTAAAH	DTTTAAAH	PBM Weirauch et al.(2014) pTH7914	0.672	0.200
TCX5 M02523_2.00	Arabidopsis thaliana	NRTTCAAAYN	NRTTTGAAYN	PBM Weirauch et al.(2014) pTH8164	0.672	0.200
AT2G20110 M07295_2.00	Arabidopsis thaliana	WWHWAADATTYAAAW	WTTTRAATHTTWDWW	Dap-seq OMalley et al.(2016) AT2G20110_col_a	0.672	0.200
AT2G20110 M07296_2.00	Arabidopsis thaliana	WWHNAAATTYAAAHN	NDTTTRAATTTNDWW	Dap-seq OMalley et al.(2016) AT2G20110_colamp_a	0.672	0.200
AT5G25790 M01319_2.00	Arabidopsis thaliana	NHYRAAHN	NDTTYRDN	PBM Lambert et al.(2019) pTH11533	0.672	0.187
fgenesh1_pg.C_Chr_09.0001000301 M02533_2.00	Ostreococcus tauri	NNNNNRHNN	NNDYNNNNN	PBM Weirauch et al.(2014) pTH9457	0.672	0.187
fgeneshCV_pg.C_scaffold_18000164 M02534_2.00	Chlorella vulgaris	NNNNDYRAAH	DTTYRHNNNN	PBM Weirauch et al.(2014) pTH9252	0.672	0.187
TCX4 M02521_2.00	Arabidopsis thaliana	DWTTYRAAWH	DWTTYRAAWH	PBM Weirauch et al.(2014) pTH7573	0.672	0.184
gw1.20.00.89.1 M02535_2.00	Ostreococcus tauri	WNYWBVWRNW	WNYWBVWRNW	PBM Weirauch et al.(2014) pTH9647	0.672	0.183
ENSTSYG00000005291 M02528_2.00	Tarsius syrichta	NNWDHDHWNN	NNWDHDHWNN	PBM Weirauch et al.(2014) pTH9366	0.672	0.176
lin54 M02526_2.00	Danio rerio	NHTYRAAH	DTTYRADN	PBM Weirauch et al.(2014) pTH8399	0.672	0.173
LIN54 M02527_2.00	Gallus gallus	NRTTYAAAH	DTTTRAAYN	PBM Weirauch et al.(2014) pTH8566	0.672	0.173
GSPATT00010696001 M02530_2.00	Paramecium tetraurelia	NNBRAAHN	NDTTYVNN	PBM Weirauch et al.(2014) pTH8720	0.672	0.173
SPU_025306 M02531_2.00	Strongylocentrotus purpuratus	NNNNWYRAAH	DTTYRWNNNN	PBM Weirauch et al.(2014) pTH9286	0.672	0.173
PK27683.1 M01322_2.00	Cannabis sativa	NDTTYAAAH	DTTTRAAHN	PBM Lambert et al.(2019) pTH11347	0.672	0.162
BGIBMGA008956 M02524_2.00	Bombyx mori	AATTTAAAW	WTTTAAATT	PBM Weirauch et al.(2014) pTH9238	0.672	0.160
GE12548 M02529_2.00	Drosophila yakuba	DTTYAAAY	RTTTRAAH	PBM Weirauch et al.(2014) pTH9262	0.672	0.160
NEMVEDRAFT_v1g111410 M01320_2.00	Nematostella vectensis	NNNNYRWRN	NYWYRNNNN	PBM Lambert et al.(2019) pTH9771	0.672	0.160
XP_002124866.1 M01321_2.00	Ciona intestinalis	NDTTYRAAN	NTTYRAAHN	PBM Lambert et al.(2019) pTH9835	0.672	0.160
For this family, TFs with SR scores > 0.660* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OMERI03G24280.1	TCR/CxC	379	406	KRKSYCECFASKVYCSESCSCRGCFNDH

Links
Other TCR/CxC family TFs
Other *Oryza meridionalis* TFs

1213 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Alligator_sinensis_CCG003455.1	Alligator sinensis	Alligator_sinensis_CCG003455.1	I	0.000
Cmyd_10007335	Chelonia mydas	Cmyd_10007335	I	0.000
ENSAMEG00000006419	Ailuropoda melanoleuca	ENSAMEG00000006419	I	0.000
ENSAMXG00000001207	Astyanax mexicanus	ENSAMXG00000001207	I	0.000
ENSBTAP00000051139-D1	Bos grunniens	ENSBTAP00000051139-D1	I	0.000
ENSCSAG00000006712	Chlorocebus sabaeus	ENSCSAG00000006712	I	0.000
ENSDNOG00000006546	Dasypus novemcinctus	ENSDNOG00000006546	I	0.000
ENSLACG00000006879	Latimeria chalumnae	ENSLACG00000006879	I	0.000
ENSLOCG00000001327	Lepisosteus oculatus	ENSLOCG00000001327	I	0.000
ENSMEUG00000015659	Macropus eugenii	ENSMEUG00000015659	I	0.000
ENSMMUG00000014369	Macaca mulatta	ENSMMUG00000014369	I	0.000
ENSMODG00000007952	Monodelphis domestica	ENSMODG00000007952	I	0.000
ENSMPUG00000013694	Mustela putorius furo	ENSMPUG00000013694	I	0.000
ENSNLEG00000004096	Nomascus leucogenys	ENSNLEG00000004096	I	0.000
ENSOANG00000001309	Ornithorhynchus anatinus	ENSOANG00000001309	I	0.000
ENSOARG00000016929	Ovis aries	ENSOARG00000016929	I	0.000
ENSONIG00000005336	Oreochromis niloticus	ENSONIG00000005336	I	0.000
ENSP00000378286	Macaca fascicularis	ENSP00000378286	I	0.000
ENSPANG00000008469	Papio anubis	ENSPANG00000008469	I	0.000
ENSPFOG00000009453	Poecilia formosa	ENSPFOG00000009453	I	0.000
ENSPPYG00000003148	Pongo abelii	ENSPPYG00000003148	I	0.000
ENSPSIG00000001786	Pelodiscus sinensis	ENSPSIG00000001786	I	0.000
ENSSSCG00000025351	Sus scrofa	ENSSSCG00000025351	I	0.000
ENSSTOG00000027839	Ictidomys tridecemlineatus	ENSSTOG00000027839	I	0.000
ENSXMAG00000003145	Xiphophorus maculatus	ENSXMAG00000003145	I	0.000
Ogr03307	Ophisaurus gracilis	Ogr03307	I	0.000
Pvit_09391	Pogona vitticeps	Pvit_09391	I	0.000
zbtb3	Tetraodon nigroviridis	ENSTNIG00000003382	I	0.000
Zbtb3	Rattus norvegicus	ENSRNOG00000019461	I	0.000
zbtb3	Xenopus tropicalis	XB-GENE-991962	I	0.000
zbtb3	Takifugu rubripes	ENSTRUG00000013773	I	0.000
ZBTB3	Tursiops truncatus	ENSTTRG00000002477	I	0.000
ZBTB3	Choloepus hoffmanni	ENSCHOG00000012845	I	0.000
ZBTB3	Canis familiaris	ENSCAFG00000015650	I	0.000
ZBTB3	Bos taurus	ENSBTAG00000021329	I	0.000
zbtb3	Gasterosteus aculeatus	ENSGACG00000016930	I	0.000
ZBTB3	Pteropus vampyrus	ENSPVAG00000003477	I	0.000
ZBTB3	Pan troglodytes	ENSPTRG00000003785	I	0.000
ZBTB3	Otolemur garnettii	ENSOGAG00000011414	I	0.000
ZBTB3	Oryctolagus cuniculus	ENSOCUG00000008921	I	0.000
ZBTB3	Callithrix jacchus	ENSCJAG00000018693	I	0.000
Zbtb3	Mus musculus	ENSMUSG00000071661	D	0.000
ZBTB3	Cavia porcellus	ENSCPOG00000011665	I	0.000
zbtb3	Danio rerio	ENSDARG00000036235	I	0.000
ZBTB3	Dasypus novemcinctus	ENSDNOG00000043011	I	0.000
ZBTB3	Myotis lucifugus	ENSMLUG00000011020	I	0.000
ZBTB3	Microcebus murinus	ENSMICG00000009961	I	0.000
Zbtb3	Dipodomys ordii	ENSDORG00000015697	I	0.000
ZBTB3	Felis catus	ENSFCAG00000027690	I	0.000
ZBTB3	Homo sapiens	ENSG00000185670	I	0.000
ZBTB3	Gorilla gorilla	ENSGGOG00000011735	I	0.000

OMERI03G24280 (Oryza meridionalis) TCR/CxC

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1213 Related TFs

OMERI03G24280 **(Oryza meridionalis)
TCR/CxC**