gene08807-v1.0-hybrid (Fragaria vesca)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 gene08807-v1.0-hybrid T346060_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.813
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.813
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.813
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.813
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.800
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.773
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.653
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.653
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.653
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.653
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.653
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.640
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.640
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.640
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.640
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.627
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.627
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.613
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.613
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.613
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.613
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.613
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.600
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.587
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.587
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.547
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.547
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.533
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna08807.1-v1.0-hybrid TCR/CxC 157 193
mrna08807.1-v1.0-hybrid TCR/CxC 239 276

Links

Other TCR/CxC family TFs
Other Fragaria vesca TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29814.m000739 Ricinus communis 29814.m000739 I
ABI4 Oryza sativa OS05G0351200 I
ABI4 Arabidopsis thaliana AT2G40220 I
ABI4 Vitis vinifera VIT_13s0067g01400 I
abi4 Zea mays GRMZM2G093595 D
ABI4 Arabidopsis lyrata Al_scaffold_0004_2621 I
AMTR_s00007p00053050 Amborella trichopoda AMTR_s00007p00053050 I
BGIOSGA018232 Oryza indica BGIOSGA018232 I
Bo3g034810 Brassica oleracea Bo3g034810 I
Bo4g025410 Brassica oleracea Bo4g025410 I
Bostr.23794s0036 Boechera stricta Bostr.23794s0036 I
Bra000178 Brassica rapa Bra000178 I
Bra004978 Brassica rapa Bra004978 I
Cagra.7053s0005 Capsella grandiflora Cagra.7053s0005 I
Carubv10025253m.g Capsella rubella Carubv10025253m.g I
cassava20838.m1 Manihot esculenta cassava20838.m1 I
cassava41265.m1 Manihot esculenta cassava41265.m1 I
Ca_12465 Cicer arietinum Ca_12465 I
chr2.CM0002.60.nc Lotus japonicus chr2.CM0002.60.nc I
Ciclev10033578m.g Citrus clementina Ciclev10033578m.g I
Cla006708 Citrullus lanatus Cla006708 I
evm.TU.supercontig_1288.2 Carica papaya evm.TU.supercontig_1288.2 I
gene21003-v1.0-hybrid Fragaria vesca gene21003-v1.0-hybrid I
GLYMA02G43240 Glycine max GLYMA02G43240 I
GLYMA14G06290 Glycine max GLYMA14G06290 I
Gorai.011G291900 Gossypium raimondii Gorai.011G291900 I
GSMUA_Achr3G10100_001 Musa acuminata GSMUA_Achr3G10100_001 I
GSMUA_Achr5G07400_001 Musa acuminata GSMUA_Achr5G07400_001 I
GSMUA_Achr9G18060_001 Musa acuminata GSMUA_Achr9G18060_001 I
LPERR05G10140 Leersia perrieri LPERR05G10140 I
Lus10009834.g Linum usitatissimum Lus10009834.g I
Lus10040944.g Linum usitatissimum Lus10040944.g I
MDP0000225376 Malus domestica MDP0000225376 I
MDP0000628484 Malus domestica MDP0000628484 I
mgf024416m Mimulus guttatus mgf024416m I
MTR_5g082950 Medicago truncatula MTR_5g082950 I
OGLUM05G13600 Oryza glumaepatula OGLUM05G13600 I
OMERI05G11540 Oryza meridionalis OMERI05G11540 I
ONIVA05G13490 Oryza nivara ONIVA05G13490 I
OPUNC05G11000 Oryza punctata OPUNC05G11000 I
orange1.1g038194m.g Citrus sinensis orange1.1g038194m.g I
ORGLA05G0109500 Oryza glaberrima ORGLA05G0109500 I
Pavir.J29572 Panicum virgatum Pavir.J29572 I
Pavir.J33237 Panicum virgatum Pavir.J33237 I
Pavir.J38620 Panicum virgatum Pavir.J38620 I
PGSC0003DMG400041883 Solanum tuberosum PGSC0003DMG400041883 I
Pm018953 Prunus mume Pm018953 I
POPTR_0008s07120 Populus trichocarpa POPTR_0008s07120 I
POPTR_0010s19370 Populus trichocarpa POPTR_0010s19370 I
PRUPE_ppa015230mg Prunus persica PRUPE_ppa015230mg I
SapurV1A.0061s0480 Salix purpurea SapurV1A.0061s0480 I
SapurV1A.0650s0090 Salix purpurea SapurV1A.0650s0090 I
Sb09g016550 Sorghum bicolor Sb09g016550 I
SELMODRAFT_420500 Selaginella moellendorffii SELMODRAFT_420500 I
SELMODRAFT_427925 Selaginella moellendorffii SELMODRAFT_427925 I
TCM_042471 Theobroma cacao TCM_042471 I
Thhalv10017614m.g Eutrema salsugineum Thhalv10017614m.g I