prkrirb (Oryzias latipes)
THAP finger

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05485 (THAP) IPR006612 ENSORLG00000005427 T348586_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
prkrirb
M02540_2.00		 Oryzias latipes
NNBBCCGGNHN
NDNCCGGVVNN		 PBM
Weirauch et al.(2014)
pTH9383		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
prkrirb
M02541_2.00 		Tetraodon nigroviridis
CCCGCGGG
CCCGCGGG		 PBM
Weirauch et al.(2014)
pTH8574 		0.975 0.975
prkrirb
M02536_2.00 		Danio rerio
NNMCMGMSGGNN
NNCCSKCKGKNN		 PBM
Weirauch et al.(2014)
pTH8319 		0.924 0.924
THAP12
M02538_2.00 		Homo sapiens
NNNYMBNNBGRN
NYCVNNVKRNNN		 PBM
Weirauch et al.(2014)
pTH9190 		0.848 0.848
THAP12
M02539_2.00 		Gallus gallus
NBNYCKGKMNNN
NNNKMCMGRNVN		 PBM
Weirauch et al.(2014)
pTH8688 		0.810 0.810
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02540_2.00 THAP finger 4 88

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000006835 THAP finger 4 88

Links

Other THAP finger family TFs
Other Oryzias latipes TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009109 Calypte anna Aan_R009109 I 0.823
Afo_R006000 Aptenodytes forsteri Afo_R006000 I 0.759
Brh_R010409 Buceros rhinoceros Brh_R010409 I 0.759
Cmyd_10020724 Chelonia mydas Cmyd_10020724 I 0.759
ENSAMEG00000016926 Ailuropoda melanoleuca ENSAMEG00000016926 I 0.848
ENSAMXG00000002922 Astyanax mexicanus ENSAMXG00000002922 I 0.886
ENSAPLG00000010379 Anas platyrhynchos ENSAPLG00000010379 I 0.759
ENSCHOG00000009417 Choloepus hoffmanni ENSCHOG00000009417 I 0.810
ENSCJAG00000012300 Callithrix jacchus ENSCJAG00000012300 I 0.821
ENSCSAG00000003894 Chlorocebus sabaeus ENSCSAG00000003894 I 0.848
ENSDNOG00000031781 Dasypus novemcinctus ENSDNOG00000031781 I 0.848
ENSDORG00000007522 Dipodomys ordii ENSDORG00000007522 I 0.747
ENSGGOG00000023767 Gorilla gorilla ENSGGOG00000023767 I 0.797
ENSGMOG00000010245 Gadus morhua ENSGMOG00000010245 I 0.937
ENSLACG00000001033 Latimeria chalumnae ENSLACG00000001033 I 0.810
ENSLOCG00000004788 Lepisosteus oculatus ENSLOCG00000004788 I 0.848
ENSMLUG00000001341 Myotis lucifugus ENSMLUG00000001341 I 0.795
ENSMMUG00000013164 Macaca mulatta ENSMMUG00000013164 I 0.722
ENSMMUG00000022399 Macaca mulatta ENSMMUG00000022399 I 0.823
ENSMMUP00000040972 Macaca fascicularis ENSMMUP00000040972 I 0.722
ENSNLEG00000005175 Nomascus leucogenys ENSNLEG00000005175 I 0.835
ENSOARG00000012702 Ovis aries ENSOARG00000012702 I 0.759
ENSOCUG00000009178 Oryctolagus cuniculus ENSOCUG00000009178 I 0.848
ENSOCUG00000017323 Oryctolagus cuniculus ENSOCUG00000017323 I 0.848
ENSOCUG00000021566 Oryctolagus cuniculus ENSOCUG00000021566 I 0.810
ENSONIG00000011168 Oreochromis niloticus ENSONIG00000011168 I 0.987
ENSP00000260045 Macaca fascicularis ENSP00000260045 I 0.823
ENSP00000260045-D1 Bos grunniens ENSP00000260045-D1 I 0.848
ENSPANG00000003101 Papio anubis ENSPANG00000003101 I 0.848
ENSPCAG00000008407 Procavia capensis ENSPCAG00000008407 I 0.835
ENSPFOG00000009414 Poecilia formosa ENSPFOG00000009414 I 1.000
ENSPPYG00000003697 Pongo abelii ENSPPYG00000003697 I 0.848
ENSPVAG00000011935 Pteropus vampyrus ENSPVAG00000011935 I 0.848
ENSXMAG00000001706 Xiphophorus maculatus ENSXMAG00000001706 I 1.000
Gfo_R003337 Geospiza fortis Gfo_R003337 I 0.759
prkrirb Gasterosteus aculeatus ENSGACG00000010435 I 0.987
prkrirb Danio rerio ENSDARG00000020964 D 0.924
prkrirb Tetraodon nigroviridis ENSTNIG00000003292 D 0.975
prkrirb Takifugu rubripes ENSTRUG00000007070 I 0.975
Tal_R010930 Tyto alba Tal_R010930 I 0.759
THAP12 Cavia porcellus ENSCPOG00000013167 I 0.848
THAP12 Canis familiaris ENSCAFG00000005274 I 0.848
THAP12 Bos taurus ENSBTAG00000031609 I 0.848
THAP12 Loxodonta africana ENSLAFG00000011743 I 0.848
THAP12 Homo sapiens ENSG00000137492 D 0.848
thap12 Xenopus tropicalis XB-GENE-6073216 I 0.797
THAP12 Taeniopygia guttata ENSTGUG00000013565 I 0.759
Thap12 Rattus norvegicus ENSRNOG00000053923 I 0.848
THAP12 Otolemur garnettii ENSOGAG00000001569 I 0.848
THAP12 Ornithorhynchus anatinus ENSOANG00000000831 I 0.702
THAP12 Anolis carolinensis ENSACAG00000017074 I 0.734
Thap12 Mus musculus ENSMUSG00000030753 I 0.848
THAP12 Monodelphis domestica ENSMODG00000005315 I 0.835
THAP12 Gallus gallus ENSGALG00000000838 D 0.810
THAP12 Gorilla gorilla ENSGGOG00000024317 I 0.810
THAP12 Meleagris gallopavo ENSMGAG00000015267 I 0.759