CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

WRKY62 *(Oryza sativa)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03106 (WRKY)	IPR003657	OS09G0417800	T354224_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY40 M02548_2.00	Arabidopsis thaliana	NRGTCAWN	NWTGACYN	PBM Weirauch et al.(2014) pTH8398	0.858	0.831
WRKY40 M07379_2.00	Arabidopsis thaliana	NNNAAAGTCAAVR	YBTTGACTTTNNN	Dap-seq OMalley et al.(2016) WRKY40_colamp_a	0.858	0.831
WRKY40 M07380_2.00	Arabidopsis thaliana	NNVAAAGTCAAVRNH	DNYBTTGACTTTBNN	Dap-seq OMalley et al.(2016) WRKY40_col	0.858	0.831
WRKY40 M08180_2.00	Arabidopsis thaliana	NNAGTCAANN	NNTTGACTNN	ChIP-seq Mathelier et al.(2014) MA1085.2	0.858	0.831
WRKY60 M02551_2.00	Arabidopsis thaliana	NYGGTCAAMNN	NNKTTGACCRN	PBM Weirauch et al.(2014) pTH7379	0.856	0.814
WRKY18 M02560_2.00	Arabidopsis thaliana	NNRGTCAANN	NNTTGACYNN	PBM Weirauch et al.(2014) pTH7360	0.854	0.847
WRKY18 M00900_2.00	Arabidopsis thaliana	NVGTCNN	NNGACBN	PBM Franco-Zorrilla et al.(2014) WRKY18	0.854	0.847
WRKY18 M07416_2.00	Arabidopsis thaliana	NNHRGTCAASR	YSTTGACYDNN	Dap-seq OMalley et al.(2016) WRKY18_col_a	0.854	0.847
WRKY18 M07417_2.00	Arabidopsis thaliana	NNNHWAGTCAANR	YNTTGACTWDNNN	Dap-seq OMalley et al.(2016) WRKY18_colamp_a	0.854	0.847
WRKY18 M11465_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY18_Q2	0.854	0.847
WRKY6 M07377_2.00	Arabidopsis thaliana	DNNNHNDHNHNRGTCAACG	CGTTGACYNDNDHNDNNNH	Dap-seq OMalley et al.(2016) WRKY6_col_a	0.813	0.661
WRKY6 M07378_2.00	Arabidopsis thaliana	NNHNWRGTCAACKNH	DNMGTTGACYWNDNN	Dap-seq OMalley et al.(2016) WRKY6_colamp_a	0.813	0.661
WRKY31 M07408_2.00	Arabidopsis thaliana	NNNNHNNNNNDRGTCAACG	CGTTGACYHNNNNNDNNNN	Dap-seq OMalley et al.(2016) WRKY31_col_a	0.811	0.661
WRKY31 M07409_2.00	Arabidopsis thaliana	NHWRGTCAACKNH	DNMGTTGACYWDN	Dap-seq OMalley et al.(2016) WRKY31_colamp_a	0.811	0.661
WRKY42 M07404_2.00	Arabidopsis thaliana	NDWRGTCAACDNNNNDNNHNN	NNDNNHNNNNHGTTGACYWHN	Dap-seq OMalley et al.(2016) WRKY42_col_a	0.809	0.644
WRKY42 M07405_2.00	Arabidopsis thaliana	HNDNNNWRGTCAACKNHNDD	HHNDNMGTTGACYWNNNHND	Dap-seq OMalley et al.(2016) WRKY42_colamp_a	0.809	0.644
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OS09T0417800-01	WRKY	144	202	KDGYQWRKYGQKVTRDNPYPRAYFRCAFAPSCPVKKKLQRCAEDRSMLVATYEGEHNHA

Links
Other WRKY family TFs
Other *Oryza sativa* TFs

716 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
CC1G_00538	Coprinopsis cinerea	CC1G_00538	N
CY34DRAFT_36919	Suillus luteus	CY34DRAFT_36919	N
fgenesh1_pg.C_scaffold_13000261	Phanerochaete chrysosporium	fgenesh1_pg.C_scaffold_13000261	N
GALMADRAFT_53514	Galerina marginata	GALMADRAFT_53514	N
JAAARDRAFT_29176	Jaapia argillacea	JAAARDRAFT_29176	N
K443DRAFT_104822	Laccaria amethystina	K443DRAFT_104822	N
LACBIDRAFT_301339	Laccaria bicolor	LACBIDRAFT_301339	N
M404DRAFT_8219	Pisolithus tinctorius	M404DRAFT_8219	N
M413DRAFT_439328	Hebeloma cylindrosporum	M413DRAFT_439328	N
PAXRUDRAFT_828316	Paxillus rubicundulus	PAXRUDRAFT_828316	N
PHACADRAFT_247972	Phanerochaete carnosa	PHACADRAFT_247972	N
PILCRDRAFT_2899	Piloderma croceum	PILCRDRAFT_2899	N
PLEOSDRAFT_1063194	Pleurotus ostreatus	PLEOSDRAFT_1063194	N
SCLCIDRAFT_90919	Scleroderma citrinum	SCLCIDRAFT_90919	N

WRKY62 (Oryza sativa) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

716 Related TFs

WRKY62 **(Oryza sativa)
WRKY**