Pavir.Ea01595 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.Ea01595 T356726_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY6
M07377_2.00 		Arabidopsis thaliana
DNNNHNDHNHNRGTCAACG
CGTTGACYNDNDHNDNNNH		 Dap-seq
OMalley et al.(2016)
WRKY6_col_a 		0.863 0.797
WRKY6
M07378_2.00 		Arabidopsis thaliana
NNHNWRGTCAACKNH
DNMGTTGACYWNDNN		 Dap-seq
OMalley et al.(2016)
WRKY6_colamp_a 		0.863 0.797
WRKY31
M07408_2.00 		Arabidopsis thaliana
NNNNHNNNNNDRGTCAACG
CGTTGACYHNNNNNDNNNN		 Dap-seq
OMalley et al.(2016)
WRKY31_col_a 		0.862 0.797
WRKY31
M07409_2.00 		Arabidopsis thaliana
NHWRGTCAACKNH
DNMGTTGACYWDN		 Dap-seq
OMalley et al.(2016)
WRKY31_colamp_a 		0.862 0.797
WRKY42
M07404_2.00 		Arabidopsis thaliana
NDWRGTCAACDNNNNDNNHNN
NNDNNHNNNNHGTTGACYWHN		 Dap-seq
OMalley et al.(2016)
WRKY42_col_a 		0.859 0.780
WRKY42
M07405_2.00 		Arabidopsis thaliana
HNDNNNWRGTCAACKNHNDD
HHNDNMGTTGACYWNNNHND		 Dap-seq
OMalley et al.(2016)
WRKY42_colamp_a 		0.859 0.780
WRKY47
M00732_2.00 		Arabidopsis thaliana
NNRGTCAACKN
NMGTTGACYNN		 PBM
Chang et al.(2013)
pTH7913 		0.858 0.797
WRKY47
M07402_2.00 		Arabidopsis thaliana
WRGTCAAMGNHVDK
MHBDNCKTTGACYW		 Dap-seq
OMalley et al.(2016)
WRKY47_col_a 		0.858 0.797
WRKY47
M07403_2.00 		Arabidopsis thaliana
NNNHWRGTCAACKNHNNNN
NNNNDNMGTTGACYWDNNN		 Dap-seq
OMalley et al.(2016)
WRKY47_colamp_a 		0.858 0.797
WRKY40
M02548_2.00 		Arabidopsis thaliana
NRGTCAWN
NWTGACYN		 PBM
Weirauch et al.(2014)
pTH8398 		0.818 0.661
WRKY40
M07379_2.00 		Arabidopsis thaliana
NNNAAAGTCAAVR
YBTTGACTTTNNN		 Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a 		0.818 0.661
WRKY40
M07380_2.00 		Arabidopsis thaliana
NNVAAAGTCAAVRNH
DNYBTTGACTTTBNN		 Dap-seq
OMalley et al.(2016)
WRKY40_col 		0.818 0.661
WRKY40
M08180_2.00 		Arabidopsis thaliana
NNAGTCAANN
NNTTGACTNN		 ChIP-seq
Mathelier et al.(2014)
MA1085.2 		0.818 0.661
WRKY18
M02560_2.00 		Arabidopsis thaliana
NNRGTCAANN
NNTTGACYNN		 PBM
Weirauch et al.(2014)
pTH7360 		0.808 0.678
WRKY18
M00900_2.00 		Arabidopsis thaliana
NVGTCNN
NNGACBN		 PBM
Franco-Zorrilla et al.(2014)
WRKY18 		0.808 0.678
WRKY18
M07416_2.00 		Arabidopsis thaliana
NNHRGTCAASR
YSTTGACYDNN		 Dap-seq
OMalley et al.(2016)
WRKY18_col_a 		0.808 0.678
WRKY18
M07417_2.00 		Arabidopsis thaliana
NNNHWAGTCAANR
YNTTGACTWDNNN		 Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a 		0.808 0.678
WRKY18
M11465_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRKY18_Q2 		0.808 0.678
WRKY60
M02551_2.00 		Arabidopsis thaliana
NYGGTCAAMNN
NNKTTGACCRN		 PBM
Weirauch et al.(2014)
pTH7379 		0.808 0.627
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea01595.1.p WRKY 145 203

Links

Other WRKY family TFs
Other Panicum virgatum TFs

758 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_04217 Capronia coronata A1O1_04217 I
A1O3_01201 Capronia epimyces A1O3_01201 I
A1O5_10463 Cladophialophora psammophila A1O5_10463 I
A1O7_02244 Cladophialophora yegresii A1O7_02244 I
A1O9_07137 Exophiala aquamarina A1O9_07137 I
AB03036.1 Alternaria brassicicola AB03036.1 I
AOL_s00193g129 Arthrobotrys oligospora AOL_s00193g129 I
ARB_04706 Arthroderma benhamiae ARB_04706 I
Bcin01g10720 Botrytis cinerea Bcin01g10720 I
CFIO01_06850 Colletotrichum fioriniae CFIO01_06850 I
CGGC5_1402 Colletotrichum gloeosporioides CGGC5_1402 I
CH063_07689 Colletotrichum higginsianum CH063_07689 I
Cob_09205 Colletotrichum orbiculare Cob_09205 I
Cob_11078 Colletotrichum orbiculare Cob_11078 I
COCC4DRAFT_73197 Bipolaris maydis COCC4DRAFT_73197 I
COCCADRAFT_6589 Bipolaris zeicola COCCADRAFT_6589 I
COCMIDRAFT_35701 Bipolaris oryzae COCMIDRAFT_35701 I
COCSADRAFT_175469 Bipolaris sorokiniana COCSADRAFT_175469 I
COCVIDRAFT_36324 Bipolaris victoriae COCVIDRAFT_36324 I
CTHT_0041740 Chaetomium thermophilum CTHT_0041740 I
fgenesh1_pg.C_scaffold_9000354 Cryphonectria parasitica fgenesh1_pg.C_scaffold_9000354 I
G647_08755 Cladophialophora carrionii G647_08755 I
GGTG_07647 Gaeumannomyces graminis GGTG_07647 I
GLRG_06548 Colletotrichum graminicola GLRG_06548 I
GMDG_04247 Pseudogymnoascus destructans GMDG_04247 I
GSTUM_00005043001 Tuber melanosporum GSTUM_00005043001 I
H072_4417 Dactylellina haptotyla H072_4417 I
H101_03147 Trichophyton interdigitale H101_03147 I
H102_02228 Trichophyton rubrum H102_02228 I
H105_02247 Trichophyton soudanense H105_02247 I
HMPREF1120_08353 Exophiala dermatitidis HMPREF1120_08353 I
HMPREF1541_00985 Cyphellophora europaea HMPREF1541_00985 I
LEMA_P091860.1 Leptosphaeria maculans LEMA_P091860.1 I
MCYG_06105 Microsporum canis MCYG_06105 I
MCYG_06105 Arthroderma otae MCYG_06105 I
MGG_07925 Magnaporthe oryzae MGG_07925 I
MPH_04494 Macrophomina phaseolina MPH_04494 I
NCU05637 Neurospora crassa NCU05637 D
NEUTE1DRAFT_148609 Neurospora tetrasperma NEUTE1DRAFT_148609 I
OIDMADRAFT_28300 Oidiodendron maius OIDMADRAFT_28300 I
PMAA_011030 Penicillium marneffei PMAA_011030 I
PMAA_011030 Talaromyces marneffei PMAA_011030 I
PODANS_4_5950 Podospora anserina PODANS_4_5950 N
PTT_11477 Pyrenophora teres PTT_11477 I
PV04_02426 Capronia semiimmersa PV04_02426 I
PV05_07246 Exophiala xenobiotica PV05_07246 I
PV06_04883 Exophiala oligosperma PV06_04883 I
PV07_02793 Cladophialophora immunda PV07_02793 I
PV08_03176 Exophiala spinifera PV08_03176 I
PV09_00512 Verruconis gallopava PV09_00512 I
PV10_00855 Exophiala mesophila PV10_00855 I
PV11_03606 Exophiala sideris PV11_03606 I
SAPIO_CDS9377 Scedosporium apiospermum SAPIO_CDS9377 I
SBOR_0775 Sclerotinia borealis SBOR_0775 I
SETTUDRAFT_113025 Setosphaeria turcica SETTUDRAFT_113025 I
SNOG_11524 Stagonospora nodorum SNOG_11524 I
SNOG_11524 Phaeosphaeria nodorum SNOG_11524 I
TEQG_07049 Trichophyton equinum TEQG_07049 I
TESG_07963 Trichophyton tonsurans TESG_07963 I
THITE_2126380 Thielavia terrestris THITE_2126380 I
TRV_07523 Trichophyton verrucosum TRV_07523 I
TSTA_006150 Talaromyces stipitatus TSTA_006150 I
UCREL1_4517 Eutypa lata UCREL1_4517 I
UCRPA7_1223 Togninia minima UCRPA7_1223 I
V499_07415 Pseudogymnoascus pannorum V499_07415 I
VDBG_10032 Verticillium alfalfae VDBG_10032 I
VDBG_10032 Verticillium albo atrum VDBG_10032 I
Z517_00407 Fonsecaea pedrosoi Z517_00407 I
Z518_01937 Rhinocladiella mackenziei Z518_01937 I
Z518_04811 Rhinocladiella mackenziei Z518_04811 I
Z519_11340 Cladophialophora bantiana Z519_11340 I