CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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KAFR_0F01040
(
Kazachstania africana
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00172 (Zn_clus)
IPR001138
KAFR_0F01040
T371671_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GAL4
M01599_2.00
Saccharomyces cerevisiae
NYCGGVN
NBCCGRN
PBM
Zhu et al.(2009)
Gal4
0.606
0.769
GAL4
M07559_2.00
Saccharomyces cerevisiae
GGANVRCW
WGYBNTCC
ChIP-exo
Rhee et al.(2011)
Gal4_1
0.606
0.769
GAL4
M07560_2.00
Saccharomyces cerevisiae
GGRAAARGGTC
GACCYTTTYCC
ChIP-exo
Rhee et al.(2011)
Gal4_2
0.606
0.769
GAL4
M07561_2.00
Saccharomyces cerevisiae
AGAACAA
TTGTTCT
ChIP-exo
Rhee et al.(2011)
Gal4_3
0.606
0.769
GAL4
M08698_2.00
Saccharomyces cerevisiae
CGGVSNNVTNYNSNCCG
CGGNSNRNABNNSBCCG
Misc
DeBoer et al.(2011)
YPL248C_1510
0.606
0.769
GAL4
M11487_2.00
Saccharomyces cerevisiae
BYWCGGWSVAVWGHBVBCCGDDV
BHHCGGVBVDCWBTBSWCCGWRV
Transfac
Matys et al.(2006)
F$GAL4_01
0.606
0.769
GAL4
M11488_2.00
Saccharomyces cerevisiae
HKYWCGGHVVRVWGHBNBCCGD
HCGGVNVDCWBYBBDCCGWRMD
Transfac
Matys et al.(2006)
F$GAL4_C
0.606
0.769
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CCF58700
Zinc cluster
3
41
QACDICRVKKLRCSKEKPSCFKCLKNNLTCTYSPRAKRS
Links
Other
Zinc cluster
family TFs
Other
Kazachstania africana
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LPERR04G05730
Leersia perrieri
LPERR04G05730
N
OBART04G08380
Oryza barthii
OBART04G08380
N
OGLUM04G08330
Oryza glumaepatula
OGLUM04G08330
N
OLONG_016724
Oryza longistaminata
OLONG_016724
N
OMERI04G07740
Oryza meridionalis
OMERI04G07740
N
ONIVA04G06810
Oryza nivara
ONIVA04G06810
N
OPUNC04G07000
Oryza punctata
OPUNC04G07000
N
ORUFI04G09620
Oryza rufipogon
ORUFI04G09620
N
RR29
Oryza indica
BGIOSGA016167
N