UME6 (Saccharomyces cerevisiae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 YDR207C T388339_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Enables DNA-binding transcription factor binding activity; DNA-binding transcription repressor activity, RNA polymerase II-specific; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including lipid droplet organization; pseudohyphal growth; and regulation of transcription by RNA polymerase II. Part of Rpd3L complex. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
UME6
M00081_2.00		 Saccharomyces cerevisiae
NDHCDHGDHN
NDHCDHGDHN		 PBM
Badis et al.(2008)
UME6_2040		 (Direct) (Direct)
UME6
M01575_2.00		 Saccharomyces cerevisiae
VGCGSNWNN
NNWNSCGCB		 PBM
Zhu et al.(2009)
Ume6		 (Direct) (Direct)
UME6
M08468_2.00		 Saccharomyces cerevisiae
TSGGCGGCTAWWT
AWWTAGCCGCCSA		 COMPILED
Mathelier et al.(2014)
MA0412.1		 (Direct) (Direct)
UME6
M08653_2.00		 Saccharomyces cerevisiae
NSGCGGYWV
BWRCCGCSN		 Misc
DeBoer et al.(2011)
YDR207C_511		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.537 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00081_2.00 Zinc cluster 51 88
M01575_2.00 Zinc cluster 769 806

DNA Binding Domains

Protein ID Domain From To Sequence
YDR207C Zinc cluster 769 806

Links

Other Zinc cluster family TFs
Other Saccharomyces cerevisiae TFs

Invalid Input OrderBy

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action