fgenesh1_pm.sca_3_chr4_2_0000157 (Nectria haematococca)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 fgenesh1_pm.sca_3_chr4_2_0000157 T390351_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
col-21
M02600_2.00 		Neurospora crassa
CGGMGWTA
TAWCKCCG		 PBM
Weirauch et al.(2014)
pTH8945 		0.610 0.750
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.sca_3_chr4_2_0000157 Zinc cluster 21 58

Links

Other Zinc cluster family TFs
Other Nectria haematococca TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_10636 Cicer arietinum Ca_10636 N
chr2.CM0803.380.nc Lotus japonicus chr2.CM0803.380.nc N
Eucgr.E01205 Eucalyptus grandis Eucgr.E01205 N
gene27722-v1.0-hybrid Fragaria vesca gene27722-v1.0-hybrid N
GLYMA01G35370 Glycine max GLYMA01G35370 N
Gorai.004G174900 Gossypium raimondii Gorai.004G174900 N
GSMUA_Achr7G04840_001 Musa acuminata GSMUA_Achr7G04840_001 N
MTR_5g026540 Medicago truncatula MTR_5g026540 N
VIT_02s0087g00140 Vitis vinifera VIT_02s0087g00140 N
VIT_08s0105g00400 Vitis vinifera VIT_08s0105g00400 N