Bo1g004940 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo1g004940 T000713_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-10
M00850_2.00 		Arabidopsis thaliana
NNRCCGHCNN
NNGDCGGYNN		 PBM
Franco-Zorrilla et al.(2014)
DEAR4 		0.815 0.980
ERF010
M06690_2.00 		Arabidopsis thaliana
HHNHHDYCACCGHCD
HGDCGGTGRHDDNDD		 Dap-seq
OMalley et al.(2016)
DEAR2_col_a 		0.814 0.940
ERF010
M06691_2.00 		Arabidopsis thaliana
NNNHDBCACCGACAH
DTGTCGGTGVHDNNN		 Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a 		0.814 0.940
ERF011
M06628_2.00 		Arabidopsis thaliana
YHNHHDYCACCGHCN
NGDCGGTGRHDDNDR		 Dap-seq
OMalley et al.(2016)
CEJ1_col_a 		0.813 0.920
ERF011
M06629_2.00 		Arabidopsis thaliana
NDNCACCGACMHH
DDKGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a 		0.813 0.920
ERF008
M00844_2.00 		Arabidopsis thaliana
SHRCCGHC
GDCGGYDS		 PBM
Franco-Zorrilla et al.(2014)
DEAR3 		0.805 0.960
ERF008
M01048_2.00 		Arabidopsis thaliana
CRCCGMCN
NGKCGGYG		 PBM
Sullivan et al.(2014)
pTH7672 		0.805 0.960
ERF008
M06602_2.00 		Arabidopsis thaliana
NNNNNBCACCGACAHHN
NDDTGTCGGTGVNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR3_col_a 		0.805 0.960
ERF008
M06603_2.00 		Arabidopsis thaliana
NNBCACCGACAWH
DWTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a 		0.805 0.960
RAP2-9
M06633_2.00 		Arabidopsis thaliana
NNNNNNNDBCACCGACMHH
DDKGTCGGTGVHNNNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR5_col_a 		0.760 0.920
RAP2-9
M06634_2.00 		Arabidopsis thaliana
NCACCGACMHH
DDKGTCGGTGN		 Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a 		0.760 0.920
RAP2-1
M06582_2.00 		Arabidopsis thaliana
NHDYCRCCGMCAH
DTGKCGGYGRHDN		 Dap-seq
OMalley et al.(2016)
RAP21_col_a 		0.728 0.860
RAP2-1
M06583_2.00 		Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN
NNNNNHDDTGTCGGTGVHDN		 Dap-seq
OMalley et al.(2016)
RAP21_colamp_a 		0.728 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g004940.1 AP2 27 78

Links

Other AP2 family TFs
Other Brassica oleracea TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MLOC_29687 Hordeum vulgare MLOC_29687 N
MLOC_74313 Hordeum vulgare MLOC_74313 N
MLOC_28634 Hordeum vulgare MLOC_28634 N
Traes_7DS_BA2B07F73 Triticum aestivum Traes_7DS_BA2B07F73 N
Traes_7BS_976F84CAE Triticum aestivum Traes_7BS_976F84CAE N
Traes_7BL_A201C1A09 Triticum aestivum Traes_7BL_A201C1A09 N
Traes_7BL_A201C1A091 Triticum aestivum Traes_7BL_A201C1A091 N
Traes_7BL_1751C4BBF Triticum aestivum Traes_7BL_1751C4BBF N
Traes_7AS_1751C4BBF Triticum aestivum Traes_7AS_1751C4BBF N
Traes_6DL_6BFC1BFFF Triticum aestivum Traes_6DL_6BFC1BFFF N
Traes_6BS_1751C4BBF Triticum aestivum Traes_6BS_1751C4BBF N
Traes_6AS_606EE58D3 Triticum aestivum Traes_6AS_606EE58D3 N
Traes_5DL_BDDD63886 Triticum aestivum Traes_5DL_BDDD63886 N
Traes_5BS_1751C4BBF Triticum aestivum Traes_5BS_1751C4BBF N
Traes_5BL_C1D0FDB41 Triticum aestivum Traes_5BL_C1D0FDB41 N
Traes_5AS_4B8974198 Triticum aestivum Traes_5AS_4B8974198 N
Traes_4BS_1751C4BBF Triticum aestivum Traes_4BS_1751C4BBF N
Traes_4AL_4031B00F8 Triticum aestivum Traes_4AL_4031B00F8 N
Traes_2DL_437FFAD8D Triticum aestivum Traes_2DL_437FFAD8D N
Traes_2BL_430D8831B Triticum aestivum Traes_2BL_430D8831B N
Traes_2BL_1751C4BBF Triticum aestivum Traes_2BL_1751C4BBF N
Traes_2AS_A93CFD534 Triticum aestivum Traes_2AS_A93CFD534 N
Traes_2AL_1751C4BBF Triticum aestivum Traes_2AL_1751C4BBF N
Traes_1DL_BE3693D27 Triticum aestivum Traes_1DL_BE3693D27 N
Traes_1AS_1751C4BBF Triticum aestivum Traes_1AS_1751C4BBF N
Traes_1AL_1751C4BBF Triticum aestivum Traes_1AL_1751C4BBF N