CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra023332 *(Brassica rapa)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	Bra023332	T001147_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TINY M01094_2.00	Arabidopsis thaliana	NHRCCGACAN	NTGTCGGYDN	PBM Lambert et al.(2019) pTH11541	0.765	0.920
TINY M06669_2.00	Arabidopsis thaliana	HNYCRCCGACANHDN	NHDNTGTCGGYGRND	Dap-seq OMalley et al.(2016) TINY_col_a	0.765	0.920
ERF043 M01627_2.00	Arabidopsis thaliana	YRCCGACA	TGTCGGYR	PBM Weirauch et al.(2014) pTH7413	0.757	0.900
ERF043 M06651_2.00	Arabidopsis thaliana	NNYCACCGACANHNNN	NNNDNTGTCGGTGRNN	Dap-seq OMalley et al.(2016) At4g32800_colamp_a	0.757	0.900
ERF043 M06652_2.00	Arabidopsis thaliana	NNYCACCGACANHNNH	DNNDNTGTCGGTGRNN	Dap-seq OMalley et al.(2016) At4g32800_col	0.757	0.900
ERF034 M06614_2.00	Arabidopsis thaliana	NHNYCACCGACANHD	HDNTGTCGGTGRNDN	Dap-seq OMalley et al.(2016) At2g44940_col_a	0.742	0.880
ERF034 M06615_2.00	Arabidopsis thaliana	NDBCACCGACANH	DNTGTCGGTGVHN	Dap-seq OMalley et al.(2016) At2g44940_colamp_a	0.742	0.880
ERF035 M06631_2.00	Arabidopsis thaliana	YCACCGACANWDNH	DNHWNTGTCGGTGR	Dap-seq OMalley et al.(2016) AT3G60490_col_a	0.733	0.860
ERF035 M06632_2.00	Arabidopsis thaliana	NNBCACCGACAHWNNN	NNNWDTGTCGGTGVNN	Dap-seq OMalley et al.(2016) AT3G60490_colamp_a	0.733	0.860
Q8LKX0_MAIZE M09722_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DBF2_01	0.706	0.880
Q5MAR7_BRANA M09742_2.00	Brassica napus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREBIII1_01	0.704	0.860
Q3HS44_BRANA M09741_2.00	Brassica napus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREBIII2_01	0.704	0.860
Q3HS43_BRANA M09740_2.00	Brassica napus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREBIII3_01	0.704	0.860
AT3G16280 M06618_2.00	Arabidopsis thaliana	NDNCACCGACANHN	NDNTGTCGGTGNHN	Dap-seq OMalley et al.(2016) AT3G16280_col_a	0.700	0.860
AT3G16280 M06619_2.00	Arabidopsis thaliana	BCACCGACAHWNNN	NNNWDTGTCGGTGV	Dap-seq OMalley et al.(2016) AT3G16280_colamp_a	0.700	0.860
ERF039 M01620_2.00	Arabidopsis thaliana	NNRCCGACDN	NHGTCGGYNN	PBM Weirauch et al.(2014) pTH8101	0.695	0.860
ERF039 M06635_2.00	Arabidopsis thaliana	HNNHDYCRCCGMCRN	NYGKCGGYGRHDNND	Dap-seq OMalley et al.(2016) At4g16750_col_a	0.695	0.860
ERF039 M06636_2.00	Arabidopsis thaliana	NNNNNNYCACCGACAHH	DDTGTCGGTGRNNNNNN	Dap-seq OMalley et al.(2016) At4g16750_colamp_a	0.695	0.860
ERF038 M06608_2.00	Arabidopsis thaliana	NHNHHDYCRCCGACA	TGTCGGYGRHDDNDN	Dap-seq OMalley et al.(2016) ERF38_col_a	0.695	0.840
ERF037 M00843_2.00	Arabidopsis thaliana	NRCCGACRN	NYGTCGGYN	PBM Franco-Zorrilla et al.(2014) At1g77200	0.688	0.860
ERF037 M06599_2.00	Arabidopsis thaliana	YCRCCGACAHHNNH	DNNDDTGTCGGYGR	Dap-seq OMalley et al.(2016) AT1G77200_col_a	0.688	0.860
ERF037 M06600_2.00	Arabidopsis thaliana	NNYACCGACAHN	NDTGTCGGTRNN	Dap-seq OMalley et al.(2016) AT1G77200_colamp_a	0.688	0.860
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bra023332.1-P	AP2	61	112	PVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGS

Links
Other AP2 family TFs
Other *Brassica rapa* TFs

431 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000007556	Ailuropoda melanoleuca	ENSAMEG00000007556	N
Alligator_sinensis_CCG011037.1	Alligator sinensis	Alligator_sinensis_CCG011037.1	N
ZBTB8A	Anolis carolinensis	ENSACAG00000004819	N
Afo_R013969	Aptenodytes forsteri	Afo_R013969	N
ENSBTAP00000024222-D1	Bos grunniens	ENSBTAP00000024222-D1	N
ZBTB8A	Bos taurus	ENSBTAG00000018199	N
Brh_R002265	Buceros rhinoceros	Brh_R002265	N
ZBTB8A	Callithrix jacchus	ENSCJAG00000001003	N
Aan_R015482	Calypte anna	Aan_R015482	N
ZBTB8A	Canis familiaris	ENSCAFG00000023779	N
ENSCPOG00000020832	Cavia porcellus	ENSCPOG00000020832	N
ENSCSAG00000001058	Chlorocebus sabaeus	ENSCSAG00000001058	N
ZBTB8A	Choloepus hoffmanni	ENSCHOG00000004051	N
ZBTB8A	Dasypus novemcinctus	ENSDNOG00000032935	N
Zbtb8a	Dipodomys ordii	ENSDORG00000007027	N
ZBTB8A	Equus caballus	ENSECAG00000023392	N
ZBTB8A	Felis catus	ENSFCAG00000027580	N
ENSFALG00000000603	Ficedula albicollis	ENSFALG00000000603	N
ENSGALG00000003420	Gallus gallus	ENSGALG00000003420	N
Gfo_R011646	Geospiza fortis	Gfo_R011646	N
ZBTB8A	Homo sapiens	ENSG00000160062	N
ENSSTOG00000024103	Ictidomys tridecemlineatus	ENSSTOG00000024103	N
ZBTB8A	Loxodonta africana	ENSLAFG00000031979	N
ENSP00000362609	Macaca fascicularis	ENSP00000362609	N
ENSMEUG00000013710	Macropus eugenii	ENSMEUG00000013710	N
ZBTB8A	Meleagris gallopavo	ENSMGAG00000004949	N
ZBTB8A	Monodelphis domestica	ENSMODG00000017424	N
ENSMPUG00000015223	Mustela putorius furo	ENSMPUG00000015223	N
Zbtb8a	Mus musculus	ENSMUSG00000028807	N
Myotis_brandtii_ZBTB8A_10012393	Myotis brandtii	Myotis_brandtii_ZBTB8A_10012393	N
ZBTB8A	Myotis lucifugus	ENSMLUG00000023002	N
ENSNLEG00000002769	Nomascus leucogenys	ENSNLEG00000002769	N
ZBTB8A	Ochotona princeps	ENSOPRG00000018275	N
Ogr05994	Ophisaurus gracilis	Ogr05994	N
ZBTB8A	Ornithorhynchus anatinus	ENSOANG00000001191	N
ZBTB8A	Oryctolagus cuniculus	ENSOCUG00000021621	N
ZBTB8A	Otolemur garnettii	ENSOGAG00000028328	N
ENSOARG00000020930	Ovis aries	ENSOARG00000020930	N
ZBTB8A	Pan troglodytes	ENSPTRG00000034505	N
ENSPANG00000019096	Papio anubis	ENSPANG00000019096	N
ENSPSIG00000008472	Pelodiscus sinensis	ENSPSIG00000008472	N
Pvit_17720	Pogona vitticeps	Pvit_17720	N
ENSPPYG00000001590	Pongo abelii	ENSPPYG00000001590	N
ZBTB8A	Procavia capensis	ENSPCAG00000013857	N
ZBTB8A	Pteropus vampyrus	ENSPVAG00000010978	N
Zbtb8a	Rattus norvegicus	ENSRNOG00000008300	N
ENSSHAG00000010423	Sarcophilus harrisii	ENSSHAG00000010423	N
ZBTB8A	Sus scrofa	ENSSSCG00000021457	N
ZBTB8A	Taeniopygia guttata	ENSTGUG00000001373	N
ENSTSYG00000009437	Tarsius syrichta	ENSTSYG00000009437	N
ZBTB8A	Tursiops truncatus	ENSTTRG00000014967	N
Tal_R009236	Tyto alba	Tal_R009236	N

Bra023332 (Brassica rapa) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

431 Related TFs

Bra023332 **(Brassica rapa)
AP2**