CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ATERF2 *(Arabidopsis lyrata)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	fgenesh2_kg.8__70__AT5G47220.1	T001712_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.764	0.980
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.764	0.980
A5JTT1_WHEAT M09700_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_01	0.761	0.898
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.756	0.898
ERF115 M06657_2.00	Arabidopsis thaliana	CCGCCGYMRYHDCCR	YGGHDRYKRCGGCGG	Dap-seq OMalley et al.(2016) ERF115_col_a	0.755	0.816
ERF115 M06658_2.00	Arabidopsis thaliana	CKCCGCCGYMRYHDY	RHDRYKRCGGCGGMG	Dap-seq OMalley et al.(2016) ERF115_colamp_a	0.755	0.816
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.747	0.959
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.747	0.959
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.747	0.959
RAP2-6 M00717_2.00	Arabidopsis thaliana	NBGCYGNH	DNCRGCVN	PBM Chang et al.(2013) pTH7225	0.717	0.816
RAP2-6 M00841_2.00	Arabidopsis thaliana	NGCCGHHNNN	NNNDDCGGCN	PBM Franco-Zorrilla et al.(2014) RAP2.6	0.717	0.816
RAP2-6 M06579_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYMD	HKRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) RAP26_col_a	0.717	0.816
RAP2-6 M06580_2.00	Arabidopsis thaliana	CGCCGY	RCGGCG	Dap-seq OMalley et al.(2016) RAP26_colamp_a	0.717	0.816
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.713	0.857
P93392_TOBAC M09731_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$OPBP1_01	0.712	0.816
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.707	0.796
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.702	0.837
ERF094 M01602_2.00	Arabidopsis thaliana	VGCCGCCD	HGGCGGCB	PBM Weirauch et al.(2014) pTH8276	0.701	0.796
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.695	0.837
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.695	0.837
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.695	0.837
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.690	0.796
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.690	0.796
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.681	0.796
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.681	0.796
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.681	0.796
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
fgenesh2_kg.8__70__AT5G47220.1	AP2	98	150	KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEAAALAYDRAAFRMRGS

Links
Other AP2 family TFs
Other *Arabidopsis lyrata* TFs

860 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ZNF239	Bos taurus	ENSBTAG00000019039	N
ZNF239	Callithrix jacchus	ENSCJAG00000016278	N
ZNF239	Canis familiaris	ENSCAFG00000031910	N
ENSCSAG00000018415	Chlorocebus sabaeus	ENSCSAG00000018415	N
ZNF239	Equus caballus	ENSECAG00000003179	N
ZNF239	Felis catus	ENSFCAG00000023538	N
ZNF239	Gorilla gorilla	ENSGGOG00000001913	N
ZNF239	Homo sapiens	ENSG00000196793	N
ENSP00000341689	Macaca fascicularis	ENSP00000341689	N
ENSMMUG00000022433	Macaca mulatta	ENSMMUG00000022433	N
ENSMPUG00000020136	Mustela putorius furo	ENSMPUG00000020136	N
Myotis_brandtii_ZNF239_10002120	Myotis brandtii	Myotis_brandtii_ZNF239_10002120	N
ENSNLEG00000015896	Nomascus leucogenys	ENSNLEG00000015896	N
ZNF239	Oryctolagus cuniculus	ENSOCUG00000010992	N
ENSOARG00000003720	Ovis aries	ENSOARG00000003720	N
ZNF239	Pan troglodytes	ENSPTRG00000022725	N
ENSPANG00000022661	Papio anubis	ENSPANG00000022661	N
ENSPPYG00000002214	Pongo abelii	ENSPPYG00000002214	N
ZNF239	Procavia capensis	ENSPCAG00000006595	N
ZNF239	Sus scrofa	ENSSSCG00000029576	N
ENSTSYG00000004834	Tarsius syrichta	ENSTSYG00000004834	N
ZNF239	Vicugna pacos	ENSVPAG00000012405	N

ATERF2 (Arabidopsis lyrata) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

860 Related TFs

ATERF2 **(Arabidopsis lyrata)
AP2**