CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

LPERR03G05400 *(Leersia perrieri)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	LPERR03G05400	T002570_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.774	0.837
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.769	0.796
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.769	0.796
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.751	0.755
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.751	0.755
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.750	0.816
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.741	0.776
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.741	0.776
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.733	0.755
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.733	0.755
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.733	0.755
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.732	0.735
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.732	0.755
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.732	0.755
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.728	0.796
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.726	0.735
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.726	0.735
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.726	0.735
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.723	0.816
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.723	0.816
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.721	0.714
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.716	0.673
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.715	0.735
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.715	0.673
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.715	0.673
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.713	0.673
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.713	0.673
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.713	0.735
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.713	0.735
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.708	0.694
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.708	0.735
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.708	0.735
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.699	0.694
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.699	0.694
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.699	0.694
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.695	0.714
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.695	0.714
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.695	0.714
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.695	0.714
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.690	0.714
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.689	0.714
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.689	0.714
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.689	0.714
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.687	0.694
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.686	0.653
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.686	0.653
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.683	0.673
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.682	0.714
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.681	0.673
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.681	0.673
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.681	0.673
PK17878.1 M01099_2.00	Cannabis sativa	CGCCGYCR	YGRCGGCG	PBM Lambert et al.(2019) pTH10133	0.680	0.653
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.679	0.714
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
LPERR03G05400.1	AP2	111	162	RHFRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGS

Links
Other AP2 family TFs
Other *Leersia perrieri* TFs

1539 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000007185	Ailuropoda melanoleuca	ENSAMEG00000007185	N
ZNF366	Anolis carolinensis	ENSACAG00000009713	N
ENSAMXG00000006287	Astyanax mexicanus	ENSAMXG00000006287	N
ZNF366	Bos taurus	ENSBTAG00000020601	N
ZNF366	Callithrix jacchus	ENSCJAG00000016387	N
ZNF366	Canis familiaris	ENSCAFG00000007986	N
ZNF366	Cavia porcellus	ENSCPOG00000007542	N
Cmyd_10009121	Chelonia mydas	Cmyd_10009121	N
ENSCSAG00000015620	Chlorocebus sabaeus	ENSCSAG00000015620	N
znf366	Danio rerio	ENSDARG00000040116	N
ZNF366	Dasypus novemcinctus	ENSDNOG00000046166	N
Zfp366	Dipodomys ordii	ENSDORG00000000338	N
ZNF366	Equus caballus	ENSECAG00000006723	N
ZNF366	Felis catus	ENSFCAG00000005456	N
ENSFALG00000010297	Ficedula albicollis	ENSFALG00000010297	N
ENSGMOG00000007538	Gadus morhua	ENSGMOG00000007538	N
ZNF366	Gallus gallus	ENSGALG00000015008	N
znf366	Gasterosteus aculeatus	ENSGACG00000006566	N
ZNF366	Gorilla gorilla	ENSGGOG00000004981	N
ZNF366	Homo sapiens	ENSG00000178175	N
ENSSTOG00000029102	Ictidomys tridecemlineatus	ENSSTOG00000029102	N
ENSLACG00000013704	Latimeria chalumnae	ENSLACG00000013704	N
ENSLOCG00000011104	Lepisosteus oculatus	ENSLOCG00000011104	N
ZNF366	Loxodonta africana	ENSLAFG00000030138	N
ENSP00000313158	Macaca fascicularis	ENSP00000313158	N
ENSMEUG00000015869	Macropus eugenii	ENSMEUG00000015869	N
ZNF366	Monodelphis domestica	ENSMODG00000001702	N
ENSMPUG00000014399	Mustela putorius furo	ENSMPUG00000014399	N
Zfp366	Mus musculus	ENSMUSG00000050919	N
Myotis_brandtii_ZNF366_10035915	Myotis brandtii	Myotis_brandtii_ZNF366_10035915	N
ENSNLEG00000004555	Nomascus leucogenys	ENSNLEG00000004555	N
Ogr16419	Ophisaurus gracilis	Ogr16419	N
ENSONIG00000015237	Oreochromis niloticus	ENSONIG00000015237	N
ZNF366	Ornithorhynchus anatinus	ENSOANG00000015788	N
ZNF366	Oryctolagus cuniculus	ENSOCUG00000004571	N
znf366	Oryzias latipes	ENSORLG00000003805	N
ZNF366	Otolemur garnettii	ENSOGAG00000008393	N
ENSOARG00000005075	Ovis aries	ENSOARG00000005075	N
ZNF366	Pan troglodytes	ENSPTRG00000016969	N
ENSPANG00000023914	Papio anubis	ENSPANG00000023914	N
ENSPSIG00000014530	Pelodiscus sinensis	ENSPSIG00000014530	N
ENSPFOG00000007607	Poecilia formosa	ENSPFOG00000007607	N
Pvit_17551	Pogona vitticeps	Pvit_17551	N
ENSPPYG00000015544	Pongo abelii	ENSPPYG00000015544	N
ZNF366	Pteropus vampyrus	ENSPVAG00000010937	N
Zfp366	Rattus norvegicus	ENSRNOG00000017249	N
ENSSHAG00000004351	Sarcophilus harrisii	ENSSHAG00000004351	N
ZNF366	Sorex araneus	ENSSARG00000010412	N
ZNF366	Sus scrofa	ENSSSCG00000016976	N
ZNF366	Taeniopygia guttata	ENSTGUG00000005717	N
znf366	Takifugu rubripes	ENSTRUG00000015639	N
znf366	Tetraodon nigroviridis	ENSTNIG00000016682	N
ZNF366	Tursiops truncatus	ENSTTRG00000011858	N
znf366	Xenopus tropicalis	XB-GENE-6464910	N
ENSXMAG00000016095	Xiphophorus maculatus	ENSXMAG00000016095	N

LPERR03G05400 (Leersia perrieri) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1539 Related TFs

LPERR03G05400 **(Leersia perrieri)
AP2**