CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc01g005630.1
(
Solanum lycopersicum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Solyc01g005630.1
T005393_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2-11
M06665_2.00
Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN
Dap-seq
OMalley et al.(2016)
RAP211_col_a
0.776
0.922
RAP2-11
M06666_2.00
Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND
Dap-seq
OMalley et al.(2016)
RAP211_colamp_a
0.776
0.922
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc01g005630.1.1
AP2
17
68
RKFVGVRQRPSGKWVAEIKNTTQKIRMWLGTFDSAEEAARAYDEAACLLRGS
Links
Other
AP2
family TFs
Other
Solanum lycopersicum
TFs
214 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy