CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Solyc06g063070.2 *(Solanum lycopersicum)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	Solyc06g063070.2	T005481_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.858	0.960
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.833	0.920
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.817	0.880
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.814	0.880
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.761	0.820
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.761	0.820
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.754	0.800
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.754	0.800
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.731	0.720
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.731	0.720
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.731	0.720
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.718	0.740
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.716	0.740
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.716	0.740
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.709	0.660
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.706	0.640
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.704	0.660
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.704	0.660
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.704	0.660
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.704	0.660
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.701	0.720
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.697	0.620
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.697	0.620
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.693	0.680
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.691	0.680
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.686	0.700
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.686	0.700
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.686	0.700
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.685	0.620
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.682	0.660
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.681	0.660
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.681	0.660
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.678	0.740
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.678	0.680
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.678	0.680
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.678	0.680
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.677	0.660
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.677	0.660
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Solyc06g063070.2.1	AP2	101	152	NQYRGIRQRPWGKWAAEIRDPRKGIRVWLGTFNSAEEAARAYDAEARRIRGK

Links
Other AP2 family TFs
Other *Solanum lycopersicum* TFs

1217 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BAUCODRAFT_75640	Baudoinia compniacensis	BAUCODRAFT_75640	N
BBA_08755	Beauveria bassiana	BBA_08755	N
A1O3_09122	Capronia epimyces	A1O3_09122	N
A1O3_06639	Capronia epimyces	A1O3_06639	N
PV04_08134	Capronia semiimmersa	PV04_08134	N
Z519_01369	Cladophialophora bantiana	Z519_01369	N
G647_02424	Cladophialophora carrionii	G647_02424	N
PV07_11857	Cladophialophora immunda	PV07_11857	N
A1O5_02111	Cladophialophora psammophila	A1O5_02111	N
A1O7_07661	Cladophialophora yegresii	A1O7_07661	N
HMPREF1541_03976	Cyphellophora europaea	HMPREF1541_03976	N
DOTSEDRAFT_71961	Dothistroma septosporum	DOTSEDRAFT_71961	N
A1O9_12701	Exophiala aquamarina	A1O9_12701	N
PV10_08232	Exophiala mesophila	PV10_08232	N
PV06_09975	Exophiala oligosperma	PV06_09975	N
PV11_06930	Exophiala sideris	PV11_06930	N
PV08_08390	Exophiala spinifera	PV08_08390	N
PV05_08566	Exophiala xenobiotica	PV05_08566	N
MANI_018902	Metarhizium anisopliae	MANI_018902	N
MBR_10279	Metarhizium brunneum	MBR_10279	N
MGU_07913	Metarhizium guizhouense	MGU_07913	N
MAJ_09511	Metarhizium majus	MAJ_09511	N
X797_008429	Metarhizium robertsii	X797_008429	N
PMAA_082550	Penicillium marneffei	PMAA_082550	N
PFICI_03421	Pestalotiopsis fici	PFICI_03421	N
MYCFIDRAFT_167080	Pseudocercospora fijiensis	MYCFIDRAFT_167080	N
Z518_06873	Rhinocladiella mackenziei	Z518_06873	N
SEPMUDRAFT_150769	Sphaerulina musiva	SEPMUDRAFT_150769	N
SPBR_02521	Sporothrix brasiliensis	SPBR_02521	N
SPBR_06706	Sporothrix brasiliensis	SPBR_06706	N
HMPREF1624_02633	Sporothrix schenckii	HMPREF1624_02633	N
HMPREF1624_01047	Sporothrix schenckii	HMPREF1624_01047	N
PMAA_082550	Talaromyces marneffei	PMAA_082550	N
TSTA_117390	Talaromyces stipitatus	TSTA_117390	N
PV09_03952	Verruconis gallopava	PV09_03952	N

Solyc06g063070.2 (Solanum lycopersicum) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1217 Related TFs

Solyc06g063070.2 **(Solanum lycopersicum)
AP2**