CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

VIT_16s0013g01110 *(Vitis vinifera)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	VIT_16s0013g01110	T006126_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.825	0.902
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.821	0.824
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.821	0.824
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.821	0.824
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.811	0.863
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.811	0.863
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.811	0.863
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.811	0.745
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.811	0.745
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.809	0.863
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.786	0.804
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.763	0.745
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.753	0.804
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.753	0.804
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.743	0.784
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.739	0.745
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.728	0.745
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.727	0.804
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.727	0.804
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.726	0.784
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.726	0.784
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.726	0.784
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.726	0.784
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.726	0.784
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.718	0.765
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.718	0.765
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.710	0.686
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.709	0.784
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.709	0.784
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.709	0.784
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.698	0.725
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.698	0.725
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.698	0.725
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.698	0.627
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.693	0.647
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.693	0.647
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.693	0.627
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.691	0.706
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.691	0.686
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.691	0.686
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.691	0.686
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.691	0.686
ERF098 M01618_2.00	Arabidopsis thaliana	NNGCCGNC	GNCGGCNN	PBM Weirauch et al.(2014) pTH8259	0.689	0.706
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.688	0.686
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.687	0.667
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.682	0.647
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.680	0.725
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
VIT_16s0013g01110.t01	AP2	81	133	RHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAARAYDRAAFKMRGS

Links
Other AP2 family TFs
Other *Vitis vinifera* TFs

1484 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BRADI2G24170	Brachypodium distachyon	BRADI2G24170	I
Cagra.14503s0008	Capsella grandiflora	Cagra.14503s0008	I
Carubv10028647m.g	Capsella rubella	Carubv10028647m.g	I
evm.TU.supercontig_49.94	Carica papaya	evm.TU.supercontig_49.94	I
Ca_04370	Cicer arietinum	Ca_04370	I
Ca_18387	Cicer arietinum	Ca_18387	I
Cla014021	Citrullus lanatus	Cla014021	I
Ciclev10001138m.g	Citrus clementina	Ciclev10001138m.g	I
Cucsa.363830	Cucumis sativus	Cucsa.363830	I
Eucgr.F04203	Eucalyptus grandis	Eucgr.F04203	I
gene27604-v1.0-hybrid	Fragaria vesca	gene27604-v1.0-hybrid	I
GLYMA10G36760	Glycine max	GLYMA10G36760	I
GLYMA20G30835	Glycine max	GLYMA20G30835	I
Gorai.005G078100	Gossypium raimondii	Gorai.005G078100	I
MLOC_7891	Hordeum vulgare	MLOC_7891	I
LPERR01G33110	Leersia perrieri	LPERR01G33110	I
LPERR05G14130	Leersia perrieri	LPERR05G14130	I
Lus10028679.g	Linum usitatissimum	Lus10028679.g	I
cassava12737.valid.m1	Manihot esculenta	cassava12737.valid.m1	I
cassava19042.valid.m1	Manihot esculenta	cassava19042.valid.m1	I
cassava19043.valid.m1	Manihot esculenta	cassava19043.valid.m1	I
MTR_1g098460	Medicago truncatula	MTR_1g098460	I
ORGLA05G0154400	Oryza glaberrima	ORGLA05G0154400	I
ORGLA01G0324200	Oryza glaberrima	ORGLA01G0324200	I
BGIOSGA019928	Oryza indica	BGIOSGA019928	I
BGIOSGA000428	Oryza indica	BGIOSGA000428	I
OMERI01G35460	Oryza meridionalis	OMERI01G35460	I
ONIVA05G18720	Oryza nivara	ONIVA05G18720	I
ONIVA01G43260	Oryza nivara	ONIVA01G43260	I
OPUNC05G15760	Oryza punctata	OPUNC05G15760	I
ORUFI05G19030	Oryza rufipogon	ORUFI05G19030	I
ORUFI01G41960	Oryza rufipogon	ORUFI01G41960	I
OS05G0437100	Oryza sativa	OS05G0437100	I
OS01G0868000	Oryza sativa	OS01G0868000	I
Pavir.Ea03713	Panicum virgatum	Pavir.Ea03713	I
Pavir.J03755	Panicum virgatum	Pavir.J03755	I
POPTR_0005s21690	Populus trichocarpa	POPTR_0005s21690	I
Pm022509	Prunus mume	Pm022509	I
29863.m001066	Ricinus communis	29863.m001066	I
Si002010m.g	Setaria italica	Si002010m.g	I
ERF110	Vitis vinifera	VIT_18s0072g00260	I
GRMZM2G457562	Zea mays	GRMZM2G457562	I
GRMZM2G149756	Zea mays	GRMZM2G149756	I
GRMZM2G100727	Zea mays	GRMZM2G100727	I

VIT_16s0013g01110 (Vitis vinifera) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1484 Related TFs

VIT_16s0013g01110 **(Vitis vinifera)
AP2**