CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Aquca_013_00161 *(Aquilegia coerulea)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Aquca_013_00161	T007483_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF11 M01606_2.00	Arabidopsis thaliana	NHGCCGNHNN	NNDNCGGCDN	PBM Weirauch et al.(2014) pTH8117	0.754	0.760
ERF11 M06575_2.00	Arabidopsis thaliana	NHNNHDSCGCCGYCRHHNNN	NNNDDYGRCGGCGSHDNNDN	Dap-seq OMalley et al.(2016) ERF11_colamp_a	0.754	0.760
ERF11 M06576_2.00	Arabidopsis thaliana	NHNYCKCCGCCGYHD	HDRCGGCGGMGRNDN	Dap-seq OMalley et al.(2016) ERF11_col_b	0.754	0.760
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.723	0.740
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.708	0.720
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.703	0.700
ERF069 M01604_2.00	Arabidopsis thaliana	NNGCCGNNN	NNNCGGCNN	PBM Weirauch et al.(2014) pTH7550	0.700	0.700
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.696	0.720
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.696	0.720
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.696	0.720
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.695	0.660
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.694	0.660
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.694	0.660
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.691	0.700
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.691	0.700
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.691	0.700
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.690	0.680
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.684	0.640
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.678	0.660
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.678	0.660
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.678	0.660
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.678	0.660
ABR1 M01051_2.00	Arabidopsis thaliana	NYGSCGSCVNN	NNBGSCGSCRN	PBM Sullivan et al.(2014) pTH7383	0.677	0.780
ABR1 M06684_2.00	Arabidopsis thaliana	CKCCGCCGYMDHHNYHNHH	DDNDRNDDHKRCGGCGGMG	Dap-seq OMalley et al.(2016) ABR1_col_a	0.677	0.780
ABR1 M06685_2.00	Arabidopsis thaliana	HNNHDSCGCCGCMAWHNNNNN	NNNNNDWTKGCGGCGSHDNND	Dap-seq OMalley et al.(2016) ABR1_colamp_a	0.677	0.780
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Aquca_013_00161.1	AP2	110	160	IKYRGVRQRPWGKWAAEIRDPFKKARIWLGTFETAEEAARVYDKAAIRFQG

Links
Other AP2 family TFs
Other *Aquilegia coerulea* TFs

519 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
OBART05G14560	Oryza barthii	OBART05G14560	N
OGLUM05G15430	Oryza glumaepatula	OGLUM05G15430	N
BGIOSGA019525	Oryza indica	BGIOSGA019525	N
OMERI05G12970	Oryza meridionalis	OMERI05G12970	N
OPUNC09G02470	Oryza punctata	OPUNC09G02470	N
ORUFI05G10340	Oryza rufipogon	ORUFI05G10340	N

Aquca_013_00161 (Aquilegia coerulea) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

519 Related TFs

Aquca_013_00161 **(Aquilegia coerulea)
AP2**