Carubv10011715m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10011715m.g T007867_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.696 0.760
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.696 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011715m AP2 15 66

Links

Other AP2 family TFs
Other Capsella rubella TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BAUCODRAFT_79464 Baudoinia compniacensis BAUCODRAFT_79464 N
BGHDH14_bgh02885 Blumeria graminis BGHDH14_bgh02885 N
A1O5_01422 Cladophialophora psammophila A1O5_01422 N
Cob_06965 Colletotrichum orbiculare Cob_06965 N
MBM_01996 Marssonina brunnea MBM_01996 N
UCRNP2_6352 Neofusicoccum parvum UCRNP2_6352 N
V499_07168 Pseudogymnoascus pannorum V499_07168 N
VDBG_01345 Verticillium albo atrum VDBG_01345 N
VDBG_01345 Verticillium alfalfae VDBG_01345 N
VDAG_07908 Verticillium dahliae VDAG_07908 N