CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10023556m.g
(
Capsella rubella
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Carubv10023556m.g
T007913_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB2A
M06655_2.00
Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN
Dap-seq
OMalley et al.(2016)
DREB2_col_a
0.699
0.816
DREB2A
M06656_2.00
Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN
Dap-seq
OMalley et al.(2016)
DREB2_colamp_a
0.699
0.816
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10023556m
AP2
81
132
CGYRGVRQRIWGKWVAEIREPGRGNRLWLGTFSSSHEAALAYDEAARAMYGQ
Carubv10023590m
AP2
70
121
CGYRGVRQRIWGKWVAEIREPGRGNRLWLGTFSSSHEAALAYDEAARAMYGQ
Links
Other
AP2
family TFs
Other
Capsella rubella
TFs
23 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000007074
Ailuropoda melanoleuca
ENSAMEG00000007074
I
ENSAPLG00000003934
Anas platyrhynchos
ENSAPLG00000003934
I
Afo_R009044
Aptenodytes forsteri
Afo_R009044
I
ENSP00000266269-D1
Bos grunniens
ENSP00000266269-D1
I
PATZ1
Bos taurus
ENSBTAG00000005478
I
Brh_R010628
Buceros rhinoceros
Brh_R010628
I
Aan_R008287
Calypte anna
Aan_R008287
I
PATZ1
Canis familiaris
ENSCAFG00000013087
I
PATZ1
Cavia porcellus
ENSCPOG00000010787
I
PATZ1
Dasypus novemcinctus
ENSDNOG00000003183
I
ENSFALG00000007450
Ficedula albicollis
ENSFALG00000007450
I
PATZ1
Gallus gallus
ENSGALG00000006934
I
Gfo_R010882
Geospiza fortis
Gfo_R010882
I
PATZ1
Gorilla gorilla
ENSGGOG00000017171
I
PATZ1
Homo sapiens
ENSG00000100105
D
ENSSTOG00000020707
Ictidomys tridecemlineatus
ENSSTOG00000020707
I
PATZ1
Loxodonta africana
ENSLAFG00000002317
I
ENSP00000266269
Macaca fascicularis
ENSP00000266269
I
PATZ1
Macaca mulatta
ENSMMUG00000013911
I
PATZ1
Meleagris gallopavo
ENSMGAG00000008439
I
PATZ1
Microcebus murinus
ENSMICG00000005430
I
Patz1
Mus musculus
ENSMUSG00000020453
I
Myotis_brandtii_PATZ1_10027570
Myotis brandtii
Myotis_brandtii_PATZ1_10027570
I
PATZ1
Myotis lucifugus
ENSMLUG00000009942
I
ENSNLEG00000004385
Nomascus leucogenys
ENSNLEG00000004385
I
PATZ1
Ornithorhynchus anatinus
ENSOANG00000014654
I
PATZ1
Otolemur garnettii
ENSOGAG00000027905
I
PATZ1
Pan troglodytes
ENSPTRG00000014268
I
ENSPSIG00000016553
Pelodiscus sinensis
ENSPSIG00000016553
I
ENSPSIG00000011562
Pelodiscus sinensis
ENSPSIG00000011562
I
Pvit_03702
Pogona vitticeps
Pvit_03702
I
ENSPPYG00000011732
Pongo abelii
ENSPPYG00000011732
I
PATZ1
Pteropus vampyrus
ENSPVAG00000001749
I
PATZ1
Tursiops truncatus
ENSTTRG00000010279
I
Tal_R008892
Tyto alba
Tal_R008892
I