Carubv10023556m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10023556m.g T007913_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB2A
M06655_2.00
Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN

NNNNDRWGKCGGTKDHDNNNN
Dap-seq
OMalley et al.(2016)
DREB2_col_a
0.699 0.816
DREB2A
M06656_2.00
Arabidopsis thaliana
NHNHMACCGMCWTWD

HWAWGKCGGTKDNDN
Dap-seq
OMalley et al.(2016)
DREB2_colamp_a
0.699 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023556m AP2 81 132
Carubv10023590m AP2 70 121

Links

Other AP2 family TFs
Other Capsella rubella TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000007074 Ailuropoda melanoleuca ENSAMEG00000007074 I
ENSAPLG00000003934 Anas platyrhynchos ENSAPLG00000003934 I
Afo_R009044 Aptenodytes forsteri Afo_R009044 I
ENSP00000266269-D1 Bos grunniens ENSP00000266269-D1 I
PATZ1 Bos taurus ENSBTAG00000005478 I
Brh_R010628 Buceros rhinoceros Brh_R010628 I
Aan_R008287 Calypte anna Aan_R008287 I
PATZ1 Canis familiaris ENSCAFG00000013087 I
PATZ1 Cavia porcellus ENSCPOG00000010787 I
PATZ1 Dasypus novemcinctus ENSDNOG00000003183 I
ENSFALG00000007450 Ficedula albicollis ENSFALG00000007450 I
PATZ1 Gallus gallus ENSGALG00000006934 I
Gfo_R010882 Geospiza fortis Gfo_R010882 I
PATZ1 Gorilla gorilla ENSGGOG00000017171 I
PATZ1 Homo sapiens ENSG00000100105 D
ENSSTOG00000020707 Ictidomys tridecemlineatus ENSSTOG00000020707 I
PATZ1 Loxodonta africana ENSLAFG00000002317 I
ENSP00000266269 Macaca fascicularis ENSP00000266269 I
PATZ1 Macaca mulatta ENSMMUG00000013911 I
PATZ1 Meleagris gallopavo ENSMGAG00000008439 I
PATZ1 Microcebus murinus ENSMICG00000005430 I
Patz1 Mus musculus ENSMUSG00000020453 I
Myotis_brandtii_PATZ1_10027570 Myotis brandtii Myotis_brandtii_PATZ1_10027570 I
PATZ1 Myotis lucifugus ENSMLUG00000009942 I
ENSNLEG00000004385 Nomascus leucogenys ENSNLEG00000004385 I
PATZ1 Ornithorhynchus anatinus ENSOANG00000014654 I
PATZ1 Otolemur garnettii ENSOGAG00000027905 I
PATZ1 Pan troglodytes ENSPTRG00000014268 I
ENSPSIG00000016553 Pelodiscus sinensis ENSPSIG00000016553 I
ENSPSIG00000011562 Pelodiscus sinensis ENSPSIG00000011562 I
Pvit_03702 Pogona vitticeps Pvit_03702 I
ENSPPYG00000011732 Pongo abelii ENSPPYG00000011732 I
PATZ1 Pteropus vampyrus ENSPVAG00000001749 I
PATZ1 Tursiops truncatus ENSTTRG00000010279 I
Tal_R008892 Tyto alba Tal_R008892 I