CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gorai.006G088000 *(Gossypium raimondii)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Gorai.006G088000	T008559_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.860	0.900
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.860	0.900
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.853	0.920
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.853	0.940
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.853	0.940
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.824	0.880
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.824	0.880
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.824	0.880
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.789	0.820
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.789	0.820
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.789	0.820
ERF11 M01606_2.00	Arabidopsis thaliana	NHGCCGNHNN	NNDNCGGCDN	PBM Weirauch et al.(2014) pTH8117	0.746	0.820
ERF11 M06575_2.00	Arabidopsis thaliana	NHNNHDSCGCCGYCRHHNNN	NNNDDYGRCGGCGSHDNNDN	Dap-seq OMalley et al.(2016) ERF11_colamp_a	0.746	0.820
ERF11 M06576_2.00	Arabidopsis thaliana	NHNYCKCCGCCGYHD	HDRCGGCGGMGRNDN	Dap-seq OMalley et al.(2016) ERF11_col_b	0.746	0.820
ERF7 M01617_2.00	Arabidopsis thaliana	NGCCGNMNNN	NNNKNCGGCN	PBM Weirauch et al.(2014) pTH7606	0.735	0.760
ERF7 M06620_2.00	Arabidopsis thaliana	YHNHYNYYDYCDCCGCCGYCD	HGRCGGCGGHGRHRRNRDNDR	Dap-seq OMalley et al.(2016) ERF7_col_a	0.735	0.760
ERF7 M06621_2.00	Arabidopsis thaliana	NNNHNNHNHHDSCGCCGCCRH	DYGGCGGCGSHDDNDNNDNNN	Dap-seq OMalley et al.(2016) ERF7_colamp_a	0.735	0.760
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.734	0.780
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.734	0.780
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.731	0.740
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.727	0.700
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.726	0.740
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.723	0.740
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.723	0.740
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.723	0.740
PK17878.1 M01099_2.00	Cannabis sativa	CGCCGYCR	YGRCGGCG	PBM Lambert et al.(2019) pTH10133	0.722	0.740
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.713	0.720
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.711	0.680
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.711	0.680
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.710	0.740
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.710	0.740
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.710	0.740
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.709	0.720
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.707	0.720
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.707	0.720
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.707	0.720
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.701	0.700
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.699	0.680
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.699	0.680
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.698	0.680
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.698	0.680
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.695	0.720
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.694	0.660
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.693	0.700
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.693	0.700
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.692	0.680
ERF087 M06573_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYYD	HRRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) AT1G28160_col_a	0.690	0.700
ERF087 M06574_2.00	Arabidopsis thaliana	HDYCKCCGCCGYCR	YGRCGGCGGMGRHD	Dap-seq OMalley et al.(2016) AT1G28160_colamp_a	0.690	0.700
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.690	0.680
ERF3 M01607_2.00	Arabidopsis thaliana	CGCCGSCR	YGSCGGCG	PBM Weirauch et al.(2014) pTH8109	0.688	0.700
ERF3 M06584_2.00	Arabidopsis thaliana	YHDYCKCCGCCGYHD	HDRCGGCGGMGRHDR	Dap-seq OMalley et al.(2016) ERF3_col_a	0.688	0.700
ERF3 M06585_2.00	Arabidopsis thaliana	NNHHDNHNNYDCCGCCGYCR	YGRCGGCGGHRNNDNHDDNN	Dap-seq OMalley et al.(2016) ERF3_colamp_a	0.688	0.700
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.687	0.700
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.686	0.720
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.684	0.660
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.684	0.720
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.683	0.680
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.682	0.640
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.681	0.680
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.680	0.660
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.680	0.660
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.680	0.680
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gorai.006G088000.1	AP2	25	76	VHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGA

Links
Other AP2 family TFs
Other *Gossypium raimondii* TFs

1720 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACRE_043870	Acremonium chrysogenum	ACRE_043870	N
AB07238.1	Alternaria brassicicola	AB07238.1	I
ARB_02276	Arthroderma benhamiae	ARB_02276	N
fgenesh1_pm.00609_#_235	Aspergillus carbonarius	fgenesh1_pm.00609_#_235	I
ACLA_049990	Aspergillus clavatus	CADACLAG00004890	I
CADAFLAG00002060	Aspergillus flavus	CADAFLAG00002060	I
AFUA_3G06170	Aspergillus fumigatus	CADAFUAG00005478	I
AFUA_4G10820	Aspergillus fumigatus	CADAFUAG00008327	I
MAT2	Aspergillus nidulans	CADANIAG00005695	I
ANIA_01962	Aspergillus nidulans	CADANIAG00008622	I
CADANGAG00004297	Aspergillus niger	CADANGAG00004297	I
EURHEDRAFT_373724	Aspergillus ruber	EURHEDRAFT_373724	I
ATEG_03987	Aspergillus terreus	CADATEAG00009198	I
M437DRAFT_74676	Aureobasidium melanogenum	M437DRAFT_74676	I
M438DRAFT_346080	Aureobasidium pullulans	M438DRAFT_346080	I
AUEXF2481DRAFT_37338	Aureobasidium subglaciale	AUEXF2481DRAFT_37338	I
BAUCODRAFT_72427	Baudoinia compniacensis	BAUCODRAFT_72427	I
BBA_05443	Beauveria bassiana	BBA_05443	I
COCC4DRAFT_168040	Bipolaris maydis	COCC4DRAFT_168040	I
COCMIDRAFT_87821	Bipolaris oryzae	COCMIDRAFT_87821	I
COCSADRAFT_171253	Bipolaris sorokiniana	COCSADRAFT_171253	I
COCVIDRAFT_34603	Bipolaris victoriae	COCVIDRAFT_34603	I
COCCADRAFT_38231	Bipolaris zeicola	COCCADRAFT_38231	I
Bcin09g02870	Botrytis cinerea	Bcin09g02870	I
PVAR5_3110	Byssochlamys spectabilis	PVAR5_3110	I
A1O1_07971	Capronia coronata	A1O1_07971	I
A1O3_06089	Capronia epimyces	A1O3_06089	I
CHGG_08188	Chaetomium globosum	CHGG_08188	I
CTHT_0006830	Chaetomium thermophilum	CTHT_0006830	I
CPUR_06949	Claviceps purpurea	CPUR_06949	I
CIMG_00406	Coccidioides immitis	CIMG_00406	I
CPC735_058040	Coccidioides posadasii	CPC735_058040	I
CFIO01_04514	Colletotrichum fioriniae	CFIO01_04514	N
CGGC5_2884	Colletotrichum gloeosporioides	CGGC5_2884	I
GLRG_08663	Colletotrichum graminicola	GLRG_08663	I
CH063_08155	Colletotrichum higginsianum	CH063_08155	I
Cob_03892	Colletotrichum orbiculare	Cob_03892	I
CSUB01_06997	Colletotrichum sublineola	CSUB01_06997	N
W97_07151	Coniosporium apollinis	W97_07151	N
CCM_04586	Cordyceps militaris	CCM_04586	I
estExt_fgenesh1_pg.C_20723	Cryphonectria parasitica	estExt_fgenesh1_pg.C_20723	I
DOTSEDRAFT_67720	Dothistroma septosporum	DOTSEDRAFT_67720	I
EPUS_03386	Endocarpon pusillum	EPUS_03386	I
UCREL1_7053	Eutypa lata	UCREL1_7053	I
A1O9_05704	Exophiala aquamarina	A1O9_05704	N
HMPREF1120_08862	Exophiala dermatitidis	HMPREF1120_08862	I
PV08_07043	Exophiala spinifera	PV08_07043	I
FFUJ_13386	Fusarium fujikuroi	FFUJ_13386	I
FGRRES_05151	Fusarium graminearum	FGRRES_05151	I
FOXG_07900	Fusarium oxysporum	FOXG_07900	I
FPSE_06551	Fusarium pseudograminearum	FPSE_06551	I
NechaG106035	Fusarium solani	NechaG106035	I
FVEG_04822	Fusarium verticillioides	FVEG_04822	I
HCBG_05263	Histoplasma capsulatum	HCBG_05263	I
LEMA_P042400.1	Leptosphaeria maculans	LEMA_P042400.1	I
MGG_03959	Magnaporthe oryzae	MGG_03959	I
MBM_09015	Marssonina brunnea	MBM_09015	I
MAC_07229	Metarhizium acridum	MAC_07229	I
MAM_00948	Metarhizium album	MAM_00948	N
MANI_017634	Metarhizium anisopliae	MANI_017634	I
MBR_05099	Metarhizium brunneum	MBR_05099	I
MGU_01572	Metarhizium guizhouense	MGU_01572	I
MAJ_07256	Metarhizium majus	MAJ_07256	I
X797_008883	Metarhizium robertsii	X797_008883	I
MYCTH_2070581	Myceliophthora thermophila	MYCTH_2070581	N
estExt_fgenesh1_pg.C_10913	Mycosphaerella fijiensis	estExt_fgenesh1_pg.C_10913	I
fgeneshN1_pm.sca_3_chr4_2_0000013	Nectria haematococca	fgeneshN1_pm.sca_3_chr4_2_0000013	I
NFIA_024390	Neosartorya fischeri	CADNFIAG00002255	I
NFIA_105270	Neosartorya fischeri	CADNFIAG00010303	I
e_gw1.16.345.1	Neurospora discreta	e_gw1.16.345.1	I
OIDMADRAFT_143853	Oidiodendron maius	OIDMADRAFT_143853	I
OCS_05413	Ophiocordyceps sinensis	OCS_05413	I
PABG_05778	Paracoccidioides brasiliensis	PABG_05778	I
Pc22g06930	Penicillium chrysogenum	Pc22g06930	I
PDIP_33190	Penicillium digitatum	PDIP_33190	N
PEX1_064750	Penicillium expansum	PEX1_064750	N
PITC_063570	Penicillium italicum	PITC_063570	I
PITC_068990	Penicillium italicum	PITC_068990	I
PMAA_040750	Penicillium marneffei	PMAA_040750	I
PDE_01613	Penicillium oxalicum	PDE_01613	I
PDE_06698	Penicillium oxalicum	PDE_06698	I
PCH_Pc22g06930	Penicillium rubens	PCH_Pc22g06930	I
U727_00429890111	Penicillium solitum	U727_00429890111	I
U727_00431010161	Penicillium solitum	U727_00431010161	I
PFICI_11445	Pestalotiopsis fici	PFICI_11445	I
PODANS_6_4110	Podospora anserina	PODANS_6_4110	N
MYCFIDRAFT_86029	Pseudocercospora fijiensis	MYCFIDRAFT_86029	I
GMDG_03362	Pseudogymnoascus destructans	GMDG_03362	I
V499_06181	Pseudogymnoascus pannorum	V499_06181	I
PTT_07342	Pyrenophora teres	PTT_07342	I
PTRG_06171	Pyrenophora triticirepentis	PTRG_06171	I
GLOINDRAFT_44333	Rhizophagus irregularis	GLOINDRAFT_44333	I
SAPIO_CDS2868	Scedosporium apiospermum	SAPIO_CDS2868	I
SBOR_3594	Sclerotinia borealis	SBOR_3594	I
SETTUDRAFT_174840	Setosphaeria turcica	SETTUDRAFT_174840	I
SMAC_07212	Sordaria macrospora	SMAC_07212	I
SEPMUDRAFT_153151	Sphaerulina musiva	SEPMUDRAFT_153151	I
SPER_0000809601	Spirometra erinaceieuropaei	SPER_0000809601	I
SPBR_09078	Sporothrix brasiliensis	SPBR_09078	I
S40288_01674	Stachybotrys chartarum	S40288_01674	I
S40285_03081	Stachybotrys chlorohalonata	S40285_03081	I
SNOG_07773	Stagonospora nodorum	SNOG_07773	I
PMAA_040750	Talaromyces marneffei	PMAA_040750	I
TSTA_008530	Talaromyces stipitatus	TSTA_008530	I
TSTA_077960	Talaromyces stipitatus	TSTA_077960	I
VHEMI05549	Torrubiella hemipterigena	VHEMI05549	I
TRIVIDRAFT_19877	Trichoderma virens	TRIVIDRAFT_19877	N
TEQG_04869	Trichophyton equinum	TEQG_04869	I
H101_00568	Trichophyton interdigitale	H101_00568	I
TRV_04977	Trichophyton verrucosum	TRV_04977	N
UV8b_664	Ustilaginoidea virens	UV8b_664	I
PV09_07372	Verruconis gallopava	PV09_07372	I
VDBG_05357	Verticillium albo atrum	VDBG_05357	N
VDBG_05357	Verticillium alfalfae	VDBG_05357	N
VDAG_07007	Verticillium dahliae	VDAG_07007	I
YALI0_B02266g	Yarrowia lipolytica	YALI0_B02266g	I
Mycgr3G33619	Zymoseptoria tritici	Mycgr3G33619	N

Gorai.006G088000 (Gossypium raimondii) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1720 Related TFs

Gorai.006G088000 **(Gossypium raimondii)
AP2**