CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

orange1.1g026385m.g *(Citrus sinensis)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	orange1.1g026385m.g	T009231_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.833	0.824
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.833	0.824
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.832	0.843
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.832	0.843
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.832	0.843
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.809	0.824
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.798	0.804
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.792	0.765
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.792	0.765
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.792	0.765
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.790	0.804
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.752	0.745
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.734	0.647
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.724	0.725
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.724	0.725
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.720	0.686
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.720	0.725
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.719	0.745
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.719	0.745
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.712	0.725
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.712	0.725
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.710	0.647
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.710	0.706
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.710	0.706
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.707	0.667
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.704	0.745
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.704	0.745
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.704	0.745
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.704	0.706
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.704	0.706
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.702	0.725
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.702	0.725
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.702	0.706
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.702	0.706
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.701	0.725
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.701	0.725
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.701	0.725
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.701	0.725
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.701	0.725
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.699	0.725
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.689	0.725
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.689	0.725
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.687	0.627
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.687	0.627
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.685	0.627
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.685	0.725
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.682	0.725
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.682	0.725
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.682	0.725
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
orange1.1g026385m	AP2	98	150	RHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGR

Links
Other AP2 family TFs
Other *Citrus sinensis* TFs

1431 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000014764	Ailuropoda melanoleuca	ENSAMEG00000014764	N
ENSAMEG00000015014	Ailuropoda melanoleuca	ENSAMEG00000015014	I
ENSAPLG00000003822	Anas platyrhynchos	ENSAPLG00000003822	N
ENSAPLG00000007386	Anas platyrhynchos	ENSAPLG00000007386	N
ENSAPLG00000016052	Anas platyrhynchos	ENSAPLG00000016052	N
MYT1L	Anolis carolinensis	ENSACAG00000005667	N
MYT1	Anolis carolinensis	ENSACAG00000006249	N
ST18	Anolis carolinensis	ENSACAG00000017961	N
GB48919	Apis mellifera	GB48919	N
Afo_R001804	Aptenodytes forsteri	Afo_R001804	N
ENSAMXG00000001873	Astyanax mexicanus	ENSAMXG00000001873	N
ENSAMXG00000002473	Astyanax mexicanus	ENSAMXG00000002473	N
ENSBTAP00000038860-D1	Bos grunniens	ENSBTAP00000038860-D1	N
ENSP00000276480-D1	Bos grunniens	ENSP00000276480-D1	N
ST18	Bos taurus	ENSBTAG00000005560	N
estExt_fgenesh2_pg.C_1230027	Branchiostoma floridae	estExt_fgenesh2_pg.C_1230027	N
MYT1L	Callithrix jacchus	ENSCJAG00000007286	N
ST18	Callithrix jacchus	ENSCJAG00000014630	N
Aan_R012927	Calypte anna	Aan_R012927	N
Cflo_03590--XP_394358.3_APIME	Camponotus floridanus	Cflo_03590--XP_394358.3_APIME	N
MYT1L	Canis familiaris	ENSCAFG00000003240	N
ST18	Canis familiaris	ENSCAFG00000006762	N
MYT1	Canis familiaris	ENSCAFG00000013222	N
ST18	Cavia porcellus	ENSCPOG00000005486	N
MYT1L	Cavia porcellus	ENSCPOG00000013246	N
ENSCSAG00000014731	Chlorocebus sabaeus	ENSCSAG00000014731	N
ST18	Choloepus hoffmanni	ENSCHOG00000010565	N
myt1la	Danio rerio	ENSDARG00000008209	N
ST18	Dasypus novemcinctus	ENSDNOG00000009682	N
St18	Dipodomys ordii	ENSDORG00000002635	N
ST18	Equus caballus	ENSECAG00000011546	N
MYT1L	Equus caballus	ENSECAG00000014657	N
MYT1L	Erinaceus europaeus	ENSEEUG00000013615	N
ST18	Felis catus	ENSFCAG00000008556	N
MYT1L	Felis catus	ENSFCAG00000013984	N
ENSFALG00000010174	Ficedula albicollis	ENSFALG00000010174	N
ENSFALG00000010354	Ficedula albicollis	ENSFALG00000010354	N
ST18	Gallus gallus	ENSGALG00000015254	N
MYT1L	Gallus gallus	ENSGALG00000016384	N
myt1la	Gasterosteus aculeatus	ENSGACG00000011952	N
ENSGACG00000013255	Gasterosteus aculeatus	ENSGACG00000013255	N
ST18	Gasterosteus aculeatus	ENSGACG00000017947	N
Gfo_R012653	Geospiza fortis	Gfo_R012653	N
ST18	Gorilla gorilla	ENSGGOG00000001223	N
MYT1L	Gorilla gorilla	ENSGGOG00000026335	N
Hsal_01303--XP_394358.3_APIME	Harpegnathos saltator	Hsal_01303--XP_394358.3_APIME	N
HMEL002385	Heliconius melpomene	HMEL002385	N
ST18	Homo sapiens	ENSG00000147488	I
MYT1L	Homo sapiens	ENSG00000186487	I
ENSSTOG00000001345	Ictidomys tridecemlineatus	ENSSTOG00000001345	N
ENSLACG00000008399	Latimeria chalumnae	ENSLACG00000008399	I
ENSLOCG00000005847	Lepisosteus oculatus	ENSLOCG00000005847	N
ENSLOCG00000017216	Lepisosteus oculatus	ENSLOCG00000017216	N
LotgiG162409	Lottia gigantea	LotgiG162409	N
MYT1L	Loxodonta africana	ENSLAFG00000002751	N
ENSMMUP00000012198	Macaca fascicularis	ENSMMUP00000012198	N
ENSP00000276480	Macaca fascicularis	ENSP00000276480	N
ST18	Macaca mulatta	ENSMMUG00000008439	N
MYT1L	Macaca mulatta	ENSMMUG00000009310	I
ST18	Meleagris gallopavo	ENSMGAG00000010851	N
MYT1L	Meleagris gallopavo	ENSMGAG00000013972	N
MYT1	Microcebus murinus	ENSMICG00000003327	N
ST18	Monodelphis domestica	ENSMODG00000009635	N
MYT1L	Monodelphis domestica	ENSMODG00000014378	N
ENSMPUG00000006922	Mustela putorius furo	ENSMPUG00000006922	N
ENSMPUG00000008741	Mustela putorius furo	ENSMPUG00000008741	N
ENSMPUG00000012946	Mustela putorius furo	ENSMPUG00000012946	N
St18	Mus musculus	ENSMUSG00000033740	N
Myt1l	Mus musculus	ENSMUSG00000061911	N
Myotis_brandtii_ST18_10012485	Myotis brandtii	Myotis_brandtii_ST18_10012485	N
MYT1L	Myotis lucifugus	ENSMLUG00000012642	N
ST18	Myotis lucifugus	ENSMLUG00000013211	N
NV11201	Nasonia vitripennis	NV11201	N
ENSNLEG00000000678	Nomascus leucogenys	ENSNLEG00000000678	N
ENSNLEG00000008466	Nomascus leucogenys	ENSNLEG00000008466	N
ENSNLEG00000010244	Nomascus leucogenys	ENSNLEG00000010244	N
ST18	Ochotona princeps	ENSOPRG00000001335	N
Ogr14932	Ophisaurus gracilis	Ogr14932	N
ENSONIG00000000499	Oreochromis niloticus	ENSONIG00000000499	N
ENSONIG00000009529	Oreochromis niloticus	ENSONIG00000009529	N
ENSONIG00000011665	Oreochromis niloticus	ENSONIG00000011665	N
ENSONIG00000018694	Oreochromis niloticus	ENSONIG00000018694	N
ST18	Ornithorhynchus anatinus	ENSOANG00000007275	N
ENSOANG00000009861	Ornithorhynchus anatinus	ENSOANG00000009861	N
ST18	Oryctolagus cuniculus	ENSOCUG00000013284	N
MYT1L	Oryctolagus cuniculus	ENSOCUG00000016764	N
myt1b	Oryzias latipes	ENSORLG00000002252	N
myt1la	Oryzias latipes	ENSORLG00000018130	N
myt1a	Oryzias latipes	ENSORLG00000020139	N
ST18	Otolemur garnettii	ENSOGAG00000012050	N
ENSOARG00000013407	Ovis aries	ENSOARG00000013407	N
MYT1L	Pan troglodytes	ENSPTRG00000011611	N
ST18	Pan troglodytes	ENSPTRG00000020245	N
ENSPANG00000005639	Papio anubis	ENSPANG00000005639	N
ENSPANG00000009233	Papio anubis	ENSPANG00000009233	N
PHUM054160	Pediculus humanus	PHUM054160	N
ENSPSIG00000005126	Pelodiscus sinensis	ENSPSIG00000005126	N
ENSPSIG00000011125	Pelodiscus sinensis	ENSPSIG00000011125	N
ENSPFOG00000002613	Poecilia formosa	ENSPFOG00000002613	N
ENSPFOG00000014046	Poecilia formosa	ENSPFOG00000014046	N
ENSPFOG00000017045	Poecilia formosa	ENSPFOG00000017045	N
Pvit_15314	Pogona vitticeps	Pvit_15314	N
ENSPPYG00000012686	Pongo abelii	ENSPPYG00000012686	N
MYT1L	Procavia capensis	ENSPCAG00000015124	N
ST18	Pteropus vampyrus	ENSPVAG00000013501	N
MYT1	Pteropus vampyrus	ENSPVAG00000017398	N
Myt1l	Rattus norvegicus	ENSRNOG00000004269	N
St18	Rattus norvegicus	ENSRNOG00000006200	N
Myt1	Rattus norvegicus	ENSRNOG00000017346	N
Sakowv30043989m.g	Saccoglossus kowalevskii	Sakowv30043989m.g	N
ENSSHAG00000012193	Sarcophilus harrisii	ENSSHAG00000012193	N
ENSSHAG00000015142	Sarcophilus harrisii	ENSSHAG00000015142	N
MYT1L	Sorex araneus	ENSSARG00000012319	N
ST18	Sus scrofa	ENSSSCG00000006266	N
MYT1L	Sus scrofa	ENSSSCG00000029334	N
ST18	Taeniopygia guttata	ENSTGUG00000010944	N
MYT1	Takifugu rubripes	ENSTRUG00000002124	N
MYT1L	Takifugu rubripes	ENSTRUG00000003414	N
ST18	Takifugu rubripes	ENSTRUG00000006078	N
myt1a	Takifugu rubripes	ENSTRUG00000007068	N
myt1la	Takifugu rubripes	ENSTRUG00000015790	N
ENSTSYG00000010425	Tarsius syrichta	ENSTSYG00000010425	N
myt1b	Tetraodon nigroviridis	ENSTNIG00000003105	N
ENSTNIG00000004354	Tetraodon nigroviridis	ENSTNIG00000004354	N
ST18	Tetraodon nigroviridis	ENSTNIG00000008501	N
myt1la	Tetraodon nigroviridis	ENSTNIG00000010716	N
ST18	Tupaia belangeri	ENSTBEG00000016040	N
MYT1L	Tursiops truncatus	ENSTTRG00000008589	N
ST18	Tursiops truncatus	ENSTTRG00000015387	N
AAI70264	Xenopus laevis	AAI70264	N
myt1.S	Xenopus laevis	XB-GENE-1009978	N
XP_002934158	Xenopus tropicalis	XP_002934158	N
XP_002936343	Xenopus tropicalis	XP_002936343	N
XP_002942428	Xenopus tropicalis	XP_002942428	N
ENSXMAG00000002367	Xiphophorus maculatus	ENSXMAG00000002367	N
ENSXMAG00000018975	Xiphophorus maculatus	ENSXMAG00000018975	N

orange1.1g026385m.g (Citrus sinensis) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1431 Related TFs

orange1.1g026385m.g **(Citrus sinensis)
AP2**