CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.Aa01184 *(Panicum virgatum)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Pavir.Aa01184	T009328_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.813	0.898
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.813	0.898
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.796	0.878
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.796	0.878
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.796	0.878
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.776	0.878
A5JTT1_WHEAT M09700_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_01	0.768	0.959
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.730	0.755
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.722	0.796
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.714	0.796
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.714	0.796
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.714	0.796
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.711	0.735
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.711	0.776
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.710	0.694
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.709	0.735
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.709	0.735
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.709	0.735
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.707	0.714
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.700	0.735
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.700	0.735
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.700	0.735
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.698	0.735
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.698	0.735
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.698	0.735
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.696	0.673
ERF13 M01615_2.00	Arabidopsis thaliana	VGCCGSCD	HGSCGGCB	PBM Weirauch et al.(2014) pTH7283	0.695	0.776
ERF13 M06612_2.00	Arabidopsis thaliana	NHDBMGCCGCCDYHD	HDRHGGCGGCKVHDN	Dap-seq OMalley et al.(2016) ERF13_colamp_a	0.695	0.776
ERF13 M06613_2.00	Arabidopsis thaliana	HDBMGCCGCCDYHDN	NHDRHGGCGGCKVHD	Dap-seq OMalley et al.(2016) ERF13_col_b	0.695	0.776
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.689	0.796
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.689	0.796
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.689	0.796
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.689	0.796
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.689	0.796
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.688	0.714
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.686	0.714
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.686	0.714
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.680	0.755
ERF7 M01617_2.00	Arabidopsis thaliana	NGCCGNMNNN	NNNKNCGGCN	PBM Weirauch et al.(2014) pTH7606	0.679	0.694
ERF7 M06620_2.00	Arabidopsis thaliana	YHNHYNYYDYCDCCGCCGYCD	HGRCGGCGGHGRHRRNRDNDR	Dap-seq OMalley et al.(2016) ERF7_col_a	0.679	0.694
ERF7 M06621_2.00	Arabidopsis thaliana	NNNHNNHNHHDSCGCCGCCRH	DYGGCGGCGSHDDNDNNDNNN	Dap-seq OMalley et al.(2016) ERF7_colamp_a	0.679	0.694
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.678	0.714
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.678	0.714
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.678	0.694
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.678	0.694
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.678	0.694
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.677	0.714
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.Aa01184.1.p	AP2	147	199	KHYRGVRQRPWGKFAAEIRDPARNGARVWLGTYDSAEDAAVAYDRAAYRMRGS

Links
Other AP2 family TFs
Other *Panicum virgatum* TFs

1061 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000007472	Ailuropoda melanoleuca	ENSAMEG00000007472	N
NFX1	Anolis carolinensis	ENSACAG00000002412	N
ENSP00000368856-D1	Bos grunniens	ENSP00000368856-D1	N
NFX1	Bos taurus	ENSBTAG00000012385	N
Brh_R011790	Buceros rhinoceros	Brh_R011790	N
Aan_R015342	Calypte anna	Aan_R015342	N
NFX1	Canis familiaris	ENSCAFG00000001848	N
NFX1	Cavia porcellus	ENSCPOG00000003470	N
ENSCSAG00000009971	Chlorocebus sabaeus	ENSCSAG00000009971	N
NFX1	Choloepus hoffmanni	ENSCHOG00000009225	N
NFX1	Dasypus novemcinctus	ENSDNOG00000002079	N
ENSFCAG00000007905	Felis catus	ENSFCAG00000007905	N
ENSFALG00000013143	Ficedula albicollis	ENSFALG00000013143	N
ENSGMOG00000006198	Gadus morhua	ENSGMOG00000006198	N
Gfo_R000789	Geospiza fortis	Gfo_R000789	N
NFX1	Gorilla gorilla	ENSGGOG00000006751	N
NFX1	Homo sapiens	ENSG00000086102	N
ENSLACG00000000769	Latimeria chalumnae	ENSLACG00000000769	N
ENSLOCG00000011211	Lepisosteus oculatus	ENSLOCG00000011211	N
ENSP00000368856	Macaca fascicularis	ENSP00000368856	N
NFX1	Monodelphis domestica	ENSMODG00000003990	N
ENSMPUG00000004111	Mustela putorius furo	ENSMPUG00000004111	N
Nfx1	Mus musculus	ENSMUSG00000028423	N
Myotis_brandtii_NFX1_10010343	Myotis brandtii	Myotis_brandtii_NFX1_10010343	N
NFX1	Myotis lucifugus	ENSMLUG00000011069	N
ENSNLEG00000005096	Nomascus leucogenys	ENSNLEG00000005096	N
ENSONIG00000006192	Oreochromis niloticus	ENSONIG00000006192	N
NFX1	Oryctolagus cuniculus	ENSOCUG00000008957	N
NFX1	Otolemur garnettii	ENSOGAG00000000775	N
ENSOARG00000009478	Ovis aries	ENSOARG00000009478	N
NFX1	Pan troglodytes	ENSPTRG00000020858	N
ENSPANG00000025304	Papio anubis	ENSPANG00000025304	N
ENSPSIG00000008420	Pelodiscus sinensis	ENSPSIG00000008420	N
ENSPFOG00000012547	Poecilia formosa	ENSPFOG00000012547	N
ENSPPYG00000019136	Pongo abelii	ENSPPYG00000019136	N
NFX1	Pteropus vampyrus	ENSPVAG00000011479	N
Nfx1	Rattus norvegicus	ENSRNOG00000009015	N
ENSSHAG00000010272	Sarcophilus harrisii	ENSSHAG00000010272	N
NFX1	Taeniopygia guttata	ENSTGUG00000007055	N
Tal_R011854	Tyto alba	Tal_R011854	N
XP_002935327	Xenopus tropicalis	XP_002935327	N

Pavir.Aa01184 (Panicum virgatum) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1061 Related TFs

Pavir.Aa01184 **(Panicum virgatum)
AP2**