Pavir.Ha00307 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ha00307 T009488_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.719 0.755
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ha00307.1.p AP2 36 87

Links

Other AP2 family TFs
Other Panicum virgatum TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_22440 Aegilops tauschii F775_22440 N
F775_22671 Aegilops tauschii F775_22671 N
MLOC_65456 Hordeum vulgare MLOC_65456 N
LPERR03G02450 Leersia perrieri LPERR03G02450 N
LPERR06G23420 Leersia perrieri LPERR06G23420 N
OB03G12640 Oryza brachyantha OB03G12640 N
ORGLA06G0236900 Oryza glaberrima ORGLA06G0236900 N
OGLUM06G29360 Oryza glumaepatula OGLUM06G29360 N
BGIOSGA020507 Oryza indica BGIOSGA020507 N
OMERI03G02480 Oryza meridionalis OMERI03G02480 N
OMERI06G27920 Oryza meridionalis OMERI06G27920 N
ONIVA06G30950 Oryza nivara ONIVA06G30950 N
OPUNC06G25510 Oryza punctata OPUNC06G25510 N
ORUFI06G29930 Oryza rufipogon ORUFI06G29930 N
OS06G0726300 Oryza sativa OS06G0726300 N
Pavir.Db00028 Panicum virgatum Pavir.Db00028 N
Pavir.Ia04458 Panicum virgatum Pavir.Ia04458 N
Pavir.J24394 Panicum virgatum Pavir.J24394 N
Si006994m.g Setaria italica Si006994m.g N
Si036757m.g Setaria italica Si036757m.g N
Sb10g030770 Sorghum bicolor Sb10g030770 N
Traes_4DL_7CB8EC5A8 Triticum aestivum Traes_4DL_7CB8EC5A8 N
Traes_4DL_B29067862 Triticum aestivum Traes_4DL_B29067862 N
TRIUR3_18560 Triticum urartu TRIUR3_18560 N
TRIUR3_32216 Triticum urartu TRIUR3_32216 N
TRIUR3_33949 Triticum urartu TRIUR3_33949 N
GRMZM2G389557 Zea mays GRMZM2G389557 N
GRMZM2G126817 Zea mays GRMZM2G126817 N
GRMZM2G074358 Zea mays GRMZM2G074358 N