chr2.CM0304.640.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr2.CM0304.640.nd T010167_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.719 0.840
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.719 0.840
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.685 0.800
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.685 0.800
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.685 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0304.640.nd AP2 56 107

Links

Other AP2 family TFs
Other Lotus japonicus TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pg.00866_#_308 Aspergillus carbonarius fgenesh1_pg.00866_#_308 N 0.000
CADAFLAG00005698 Aspergillus flavus CADAFLAG00005698 N 0.000
AFUA_2G10850 Aspergillus fumigatus CADAFUAG00004240 N 0.000
ANIA_05924 Aspergillus nidulans CADANIAG00007107 N 0.000
CADANGAG00001782 Aspergillus niger CADANGAG00001782 N 0.000
EURHEDRAFT_450545 Aspergillus ruber EURHEDRAFT_450545 N 0.000
ATEG_01494 Aspergillus terreus CADATEAG00001577 N 0.000
M437DRAFT_45546 Aureobasidium melanogenum M437DRAFT_45546 I 0.000
M438DRAFT_281522 Aureobasidium pullulans M438DRAFT_281522 I 0.000
AUEXF2481DRAFT_674882 Aureobasidium subglaciale AUEXF2481DRAFT_674882 N 0.000
BBA_01486 Beauveria bassiana BBA_01486 N 0.000
PVAR5_2411 Byssochlamys spectabilis PVAR5_2411 N 0.000
CCM_05346 Cordyceps militaris CCM_05346 N 0.000
e_gw1.3.249.1 Cryphonectria parasitica e_gw1.3.249.1 N 0.000
PV06_01163 Exophiala oligosperma PV06_01163 N 0.000
PV05_04590 Exophiala xenobiotica PV05_04590 N 0.000
MAM_03883 Metarhizium album MAM_03883 N 0.000
NFIA_086160 Neosartorya fischeri CADNFIAG00006888 N 0.000
Pc22g21140 Penicillium chrysogenum Pc22g21140 N 0.000
PDIP_63820 Penicillium digitatum PDIP_63820 N 0.000
PITC_004270 Penicillium italicum PITC_004270 N 0.000
PDE_03860 Penicillium oxalicum PDE_03860 N 0.000
PCH_Pc22g21140 Penicillium rubens PCH_Pc22g21140 N 0.000
U727_00431202221 Penicillium solitum U727_00431202221 N 0.000
Z518_08281 Rhinocladiella mackenziei Z518_08281 N 0.000
VHEMI03538 Torrubiella hemipterigena VHEMI03538 N 0.000