PGSC0003DMG400010001 (Solanum tuberosum)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 PGSC0003DMG400010001 T015422_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.681 0.825
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.672 0.762
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400025905 ARID/BRIGHT 1 81

Links

Other ARID/BRIGHT family TFs
Other Solanum tuberosum TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I
Bostr.20505s0075 Boechera stricta Bostr.20505s0075 N
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N
PK20225.1 Cannabis sativa PK20225.1 D
evm.TU.supercontig_7.53 Carica papaya evm.TU.supercontig_7.53 I
Cla019977 Citrullus lanatus Cla019977 I
Ciclev10016289m.g Citrus clementina Ciclev10016289m.g I
orange1.1g024670m.g Citrus sinensis orange1.1g024670m.g I
Cucsa.213230 Cucumis sativus Cucsa.213230 I
Eucgr.K01103 Eucalyptus grandis Eucgr.K01103 N
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I
gene29828-v1.0-hybrid Fragaria vesca gene29828-v1.0-hybrid I
GLYMA07G32690 Glycine max GLYMA07G32690 I
Gorai.011G034000 Gossypium raimondii Gorai.011G034000 I
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I
MLOC_64390 Hordeum vulgare MLOC_64390 I
LPERR03G10060 Leersia perrieri LPERR03G10060 I
LPERR01G07000 Leersia perrieri LPERR01G07000 I
Lus10013917.g Linum usitatissimum Lus10013917.g I
Lus10001885.g Linum usitatissimum Lus10001885.g I
MDP0000249969 Malus domestica MDP0000249969 I
MDP0000256492 Malus domestica MDP0000256492 N
cassava32077.m1 Manihot esculenta cassava32077.m1 I
cassava18812.valid.m1 Manihot esculenta cassava18812.valid.m1 I
mgf022146m Mimulus guttatus mgf022146m N
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I
GSMUA_Achr7G10740_001 Musa acuminata GSMUA_Achr7G10740_001 I
GSMUA_Achr3G03510_001 Musa acuminata GSMUA_Achr3G03510_001 N
GSMUA_Achr2G20040_001 Musa acuminata GSMUA_Achr2G20040_001 N
GSMUA_Achr10G14370_001 Musa acuminata GSMUA_Achr10G14370_001 N
OBART03G11320 Oryza barthii OBART03G11320 I
OB03G21490 Oryza brachyantha OB03G21490 I
OB01G17480 Oryza brachyantha OB01G17480 I
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I
ORGLA01G0065100 Oryza glaberrima ORGLA01G0065100 I
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I
OGLUM01G08450 Oryza glumaepatula OGLUM01G08450 I
BGIOSGA003013 Oryza indica BGIOSGA003013 I
OLONG_004075 Oryza longistaminata OLONG_004075 I
OMERI01G07330 Oryza meridionalis OMERI01G07330 I
ONIVA01G09540 Oryza nivara ONIVA01G09540 I
ONIVA03G12280 Oryza nivara ONIVA03G12280 I
OPUNC01G07130 Oryza punctata OPUNC01G07130 I
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I
ORUFI01G08040 Oryza rufipogon ORUFI01G08040 I
OS03G0260600 Oryza sativa OS03G0260600 I
OS01G0218100 Oryza sativa OS01G0218100 I
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I
Pavir.Ea00157 Panicum virgatum Pavir.Ea00157 I
PRUPE_ppa021837mg Prunus persica PRUPE_ppa021837mg N
29900.m001610 Ricinus communis 29900.m001610 I
SapurV1A.0029s0640 Salix purpurea SapurV1A.0029s0640 N
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I
Si002517m.g Setaria italica Si002517m.g I
Si039730m.g Setaria italica Si039730m.g I
Solyc02g076920.2 Solanum lycopersicum Solyc02g076920.2 I
PGSC0003DMG400010208 Solanum tuberosum PGSC0003DMG400010208 I
Sb01g040450 Sorghum bicolor Sb01g040450 I
Sb03g001730 Sorghum bicolor Sb03g001730 I
TCM_029711 Theobroma cacao TCM_029711 I
TRAES3BF011300020CFD_g Triticum aestivum TRAES3BF011300020CFD_g I
VIT_14s0068g01580 Vitis vinifera VIT_14s0068g01580 I
GRMZM2G043854 Zea mays GRMZM2G043854 I
GRMZM2G166642 Zea mays GRMZM2G166642 I
GRMZM2G016039 Zea mays GRMZM2G016039 I