Cla016376 (Citrullus lanatus)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Cla016376 T015881_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.525 0.390
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.513 0.488
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.495 0.427
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.467 0.378
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.467 0.378
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.467 0.378
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.467 0.378
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.467 0.378
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.467 0.378
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.467 0.366
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.467 0.317
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.460 0.354
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.460 0.354
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.460 0.354
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.460 0.354
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.460 0.354
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla016376 ARID/BRIGHT 82 164

Links

Other ARID/BRIGHT family TFs
Other Citrullus lanatus TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACHR008952 Anopheles christyi ACHR008952 I
AEPI008594 Anopheles epiroticus AEPI008594 I
e_gw.291.69.1 Branchiostoma floridae e_gw.291.69.1 I
Bm11328 Brugia malayi Bm11328 I
egl-44 Caenorhabditis elegans WBGene00001208 I
TEAD3 Canis familiaris ENSCAFG00000001326 I
ENSCING00000019408 Ciona intestinalis ENSCING00000019408 I
ENSCSAVG00000007634 Ciona savignyi ENSCSAVG00000007634 I
CpipJ_CPIJ013490 Culex pipiens CpipJ_CPIJ013490 I
CPIJ013490 Culex quinquefasciatus CPIJ013490 I
tead1a Danio rerio ENSDARG00000028159 I
tead1b Danio rerio ENSDARG00000059483 I
ECANG7_01760 Echinococcus canadensis ECANG7_01760 I
TEAD3 Equus caballus ENSECAG00000015056 I
ENSGMOG00000015271 Gadus morhua ENSGMOG00000015271 I
ENSGALG00000000953 Gallus gallus ENSGALG00000000953 I
TEAD3 Gorilla gorilla ENSGGOG00000001847 I
HHAL001589-PA Halyomorpha halys HHAL001589-PA I
TEAD4 Homo sapiens ENSG00000197905 D
TEAD3 Homo sapiens ENSG00000007866 D
ENSLACG00000016717 Latimeria chalumnae ENSLACG00000016717 N
TEAD3 Loxodonta africana ENSLAFG00000014818 I
TEAD4 Meleagris gallopavo ENSMGAG00000013910 I
TEAD3 Microcebus murinus ENSMICG00000000029 I
Tead4 Mus musculus ENSMUSG00000030353 D
NEMVEDRAFT_v1g86806 Nematostella vectensis NEMVEDRAFT_v1g86806 I
OFLC_0000413701 Onchocerca flexuosa OFLC_0000413701 I
ENSONIG00000011013 Oreochromis niloticus ENSONIG00000011013 I
TEAD4 Oryzias latipes ENSORLG00000002553 I
TEAD3 Otolemur garnettii ENSOGAG00000002943 I
ENSOARG00000012126 Ovis aries ENSOARG00000012126 I
ENSPSIG00000006176 Pelodiscus sinensis ENSPSIG00000006176 I
PPAI001408 Phlebotomus papatasi PPAI001408 I
ENSPFOG00000003170 Poecilia formosa ENSPFOG00000003170 I
Pvit_05988 Pogona vitticeps Pvit_05988 I
SMAR011013 Strigamia maritima SMAR011013 I
TsM_000210300 Taenia solium TsM_000210300 I
tead3a Takifugu rubripes ENSTRUG00000011546 I
tead1a Takifugu rubripes ENSTRUG00000005940 I
D917_06432 Trichinella nativa D917_06432 I
D918_02240 Trichuris suis D918_02240 N
TEAD3 Tursiops truncatus ENSTTRG00000009434 I