Sakowv30017861m.g (Saccoglossus kowalevskii)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Sakowv30017861m.g T016043_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.503 0.400
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.503 0.365
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.481 0.471
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.468 0.459
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.468 0.447
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.468 0.447
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.468 0.447
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.468 0.447
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.468 0.447
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.467 0.447
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.467 0.447
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.467 0.447
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.467 0.447
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.467 0.424
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.467 0.412
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.447 0.376
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23955197_peptide ARID/BRIGHT 1030 1115
23955198_peptide ARID/BRIGHT 1030 1115
23955199_peptide ARID/BRIGHT 989 1074
23955200_peptide ARID/BRIGHT 960 1045
23955201_peptide ARID/BRIGHT 914 999
23955202_peptide ARID/BRIGHT 914 999
23955203_peptide ARID/BRIGHT 873 958
23955204_peptide ARID/BRIGHT 848 933
23955205_peptide ARID/BRIGHT 777 862
23955206_peptide ARID/BRIGHT 740 825
23955207_peptide ARID/BRIGHT 452 537
23955208_peptide ARID/BRIGHT 382 467
23955209_peptide ARID/BRIGHT 1030 1115
23955210_peptide ARID/BRIGHT 94 179

Links

Other ARID/BRIGHT family TFs
Other Saccoglossus kowalevskii TFs

411 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000013670 Ailuropoda melanoleuca ENSAMEG00000013670 I
ENSAPLG00000003489 Anas platyrhynchos ENSAPLG00000003489 I
ZBTB49 Anolis carolinensis ENSACAG00000010957 I
Afo_R000623 Aptenodytes forsteri Afo_R000623 I
ENSP00000338807-D1 Bos grunniens ENSP00000338807-D1 I
ZBTB49 Bos taurus ENSBTAG00000014680 I
Brh_R008967 Buceros rhinoceros Brh_R008967 I
ZBTB49 Callithrix jacchus ENSCJAG00000000119 I
Aan_R008590 Calypte anna Aan_R008590 I
ZBTB49 Canis familiaris ENSCAFG00000015688 I
ZBTB49 Cavia porcellus ENSCPOG00000007981 I
ENSCSAG00000016270 Chlorocebus sabaeus ENSCSAG00000016270 I
ZBTB49 Dasypus novemcinctus ENSDNOG00000016261 I
ZBTB49 Equus caballus ENSECAG00000013694 I
ZBTB49 Felis catus ENSFCAG00000015510 I
ZBTB49 Gallus gallus ENSGALG00000015009 I
Gfo_R014333 Geospiza fortis Gfo_R014333 I
ZBTB49 Gorilla gorilla ENSGGOG00000013012 I
ZBTB49 Homo sapiens ENSG00000168826 D
ENSSTOG00000000550 Ictidomys tridecemlineatus ENSSTOG00000000550 I
ENSLACG00000007886 Latimeria chalumnae ENSLACG00000007886 I
ENSLOCG00000009974 Lepisosteus oculatus ENSLOCG00000009974 I
ZBTB49 Loxodonta africana ENSLAFG00000016590 I
ZBTB49 Macaca mulatta ENSMMUG00000023394 I
ZBTB49 Meleagris gallopavo ENSMGAG00000012706 I
ENSMICG00000000204 Microcebus murinus ENSMICG00000000204 I
ZBTB49 Monodelphis domestica ENSMODG00000001516 I
Zbtb49 Mus musculus ENSMUSG00000029127 I
Myotis_brandtii_ZBTB49_10013405 Myotis brandtii Myotis_brandtii_ZBTB49_10013405 I
ZBTB49 Myotis lucifugus ENSMLUG00000009904 I
ENSNLEG00000016142 Nomascus leucogenys ENSNLEG00000016142 I
ZBTB49 Oryctolagus cuniculus ENSOCUG00000007993 I
ZBTB49 Otolemur garnettii ENSOGAG00000000988 I
ENSOARG00000007577 Ovis aries ENSOARG00000007577 I
ZBTB49 Pan troglodytes ENSPTRG00000015868 I
ENSPANG00000015665 Papio anubis ENSPANG00000015665 I
ENSPSIG00000015554 Pelodiscus sinensis ENSPSIG00000015554 I
Pvit_18935 Pogona vitticeps Pvit_18935 I
ENSPPYG00000014601 Pongo abelii ENSPPYG00000014601 I
ZBTB49 Pteropus vampyrus ENSPVAG00000015185 I
Zbtb49 Rattus norvegicus ENSRNOG00000005633 I
ENSSHAG00000008414 Sarcophilus harrisii ENSSHAG00000008414 I
ZBTB49 Sus scrofa ENSSSCG00000008728 I
ZBTB49 Taeniopygia guttata ENSTGUG00000009920 I
ENSTBEG00000005000 Tupaia belangeri ENSTBEG00000005000 I