CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10021143m.g
(
Eutrema salsugineum
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Thhalv10021143m.g
T017174_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB10
M06700_2.00
Arabidopsis thaliana
TWATAA
TTATWA
Dap-seq
OMalley et al.(2016)
At3g13350_col_a
0.826
0.826
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10021143m
ARID/BRIGHT
41
126
SSVLFWEKLRALPGFSSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVIKDRKWKEVIGAFNFPTTITSASFVLRKYYLKFLYEME
Thhalv10021143m
Sox
237
306
PKCHRSGYNFFFAEQHARLKHENHGLEQTKSITRKIGNMWRDLPESEKQVYQDQGSKDVERYRIEMLEYK
Thhalv10021261m
ARID/BRIGHT
41
126
SSVLFWEKLRALPGFSSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVIKDRKWKEVIGAFNFPTTITSASFVLRKYYLKFLYEME
Thhalv10021261m
Sox
237
286
PKCHRSGYNFFFAEQHARLKHENHGLEQTKSITRKIGNMWRDLPESEKQV
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Eutrema salsugineum
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy