CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BGIOSGA000456
(
Oryza indica
)
AT hook
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02178 (AT_hook)
IPR017956
BGIOSGA000456
T017240_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU01145
M01693_2.00
Neurospora crassa
RWATAWWTNN
NNAWWTATWY
PBM
Weirauch et al.(2014)
pTH8916
0.991
0.429
athp-3
M01691_2.00
Caenorhabditis elegans
NNDDWDH
DHWHHNN
PBM
Weirauch et al.(2014)
pTH9097
0.991
0.397
hmg-12
M01690_2.00
Caenorhabditis elegans
NNAWWTAWWTNN
NNAWWTAWWTNN
PBM
Weirauch et al.(2014)
pTH8997
0.991
0.395
HMGA
M01671_2.00
Arabidopsis thaliana
NNNNDWAWH
DWTWHNNNN
PBM
Weirauch et al.(2014)
pTH7395
0.991
0.381
ANIA_01690
M01675_2.00
Aspergillus nidulans
NNNNRHDDN
NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH8216
0.991
0.381
HMG-I Y
M02652_2.00
Pisum sativum
NDWVAAANRVMRWMAY
RTKWYKBYNTTTBWHN
SELEX
Mathelier et al.(2014)
MA0045.1
0.991
0.381
Hmga2
M00751_2.00
Mus musculus
NNNNRHWWNN
NNWWDYNNNN
PBM
Weirauch et al.(2013)
pTH3046
0.991
0.333
FGRRES_05233
M01104_2.00
Fusarium graminearum
NNNDWWAWWH
DWWTWWHNNN
PBM
Lambert et al.(2019)
pTH11377
0.991
0.333
NCU05635
M01694_2.00
Neurospora crassa
NNNWWWWNNN
NNNWWWWNNN
PBM
Weirauch et al.(2014)
pTH8863
0.991
0.333
HMGA1
M09769_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_01
0.991
0.333
HMGA1
M09770_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_Q4
0.991
0.333
ENSPPYG00000004736
M01685_2.00
Pongo abelii
NNNNDWWW
WWWHNNNN
PBM
Weirauch et al.(2014)
pTH9279
0.991
0.317
HMGA2
M09771_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGA2_01
0.991
0.317
FGRRES_17512
M01105_2.00
Fusarium graminearum
NNNDNWWWW
WWWWNHNNN
PBM
Lambert et al.(2019)
pTH11412
0.991
0.270
AHL13
M01672_2.00
Arabidopsis thaliana
NAWWTAWWWN
NWWWTAWWTN
PBM
Weirauch et al.(2014)
pTH8202
0.991
0.254
BRADI3G55950
M01673_2.00
Brachypodium distachyon
NNNNRHDDN
NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH9369
0.991
0.254
OS02G0824300
M01688_2.00
Oryza sativa
NNDWAWWN
NWWTWHNN
PBM
Weirauch et al.(2014)
pTH8406
0.991
0.254
VIT_08s0007g04020
M01689_2.00
Vitis vinifera
DBNDDDDDDN
NHHHHHHNVH
PBM
Weirauch et al.(2014)
pTH9295
0.991
0.254
TVAG_474020
M01106_2.00
Trichomonas vaginalis
DNWWWAWW
WWTWWWNH
PBM
Lambert et al.(2019)
pTH11493
0.991
0.254
SUM1
M00008_2.00
Saccharomyces cerevisiae
NNDWWWH
DWWWHNN
PBM
Badis et al.(2008)
SUM1_2124
0.991
0.206
SUM1
M07439_2.00
Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1
0.991
0.206
SUM1
M08478_2.00
Saccharomyces cerevisiae
RYGWCASWAAW
WTTWSTGWCRY
Misc
DeBoer et al.(2011)
YDR310C_383
0.991
0.206
SUM1
M08479_2.00
Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH
Misc
DeBoer et al.(2011)
YDR310C_478
0.991
0.206
Q7DLU9_PEA
M09772_2.00
Pisum sativum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HMGIY_01
0.991
0.206
MTR_4g101990
M01687_2.00
Medicago truncatula
AAAWTAAT
ATTAWTTT
PBM
Weirauch et al.(2014)
pTH9209
0.991
0.175
PK00377.1
M01107_2.00
Cannabis sativa
DAWWWAWW
WWTWWWTH
PBM
Lambert et al.(2019)
pTH11338
0.991
0.175
kmt2cb
M01679_2.00
Danio rerio
WWAWAWAT
ATWTWTWW
PBM
Weirauch et al.(2014)
pTH7876
0.991
0.159
BRADI5G22430
M01674_2.00
Brachypodium distachyon
VNRDDDHDD
HHDHHHYNB
PBM
Weirauch et al.(2014)
pTH9242
0.991
0.143
Setbp1
M01683_2.00
Mus musculus
NDNNNNNNHN
NDNNNNNNHN
PBM
Weirauch et al.(2014)
pTH1294
0.991
0.143
PHF21A
M01103_2.00
Monodelphis domestica
NNNAWATWAATN
NATTWATWTNNN
PBM
Lambert et al.(2019)
pTH9309
0.991
0.127
PHF21A
M01682_2.00
Monodelphis domestica
NNNNNHRH
DYDNNNNN
PBM
Weirauch et al.(2014)
pTH9335
0.991
0.127
Phf21a
M01684_2.00
Mus musculus
NNNATATWAATN
NATTWATATNNN
PBM
Weirauch et al.(2014)
pTH8550
0.991
0.127
Xrp1
M01686_2.00
Drosophila melanogaster
NNNNDWAWW
WWTWHNNNN
PBM
Weirauch et al.(2014)
pTH9260
0.991
0.127
PK26376.1
M01108_2.00
Cannabis sativa
DDWWWAWW
WWTWWWHH
PBM
Lambert et al.(2019)
pTH11261
0.991
0.127
Xrp1
M05900_2.00
Drosophila melanogaster
RTKRYGYAAT
ATTRCRYMAY
B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113
0.991
0.127
ATEG_07399
M01676_2.00
Aspergillus terreus
DHNNHNDWWW
WWWHNDNNDH
PBM
Weirauch et al.(2014)
pTH9237
0.991
0.111
ENSACAG00000014978
M01677_2.00
Anolis carolinensis
NNNNNDRH
DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9222
0.991
0.111
phf21ab
M01678_2.00
Danio rerio
NNNDNADW
WHTNHNNN
PBM
Weirauch et al.(2014)
pTH9254
0.991
0.111
phf21ab
M01680_2.00
Gasterosteus aculeatus
AAAAWAAA
TTTWTTTT
PBM
Weirauch et al.(2014)
pTH9180
0.991
0.111
PHF21A
M01681_2.00
Meleagris gallopavo
HDNHNNDNHD
HDNHNNDNHD
PBM
Weirauch et al.(2014)
pTH7875
0.991
0.111
Ahctf1
M00750_2.00
Mus musculus
AAAWAWAW
ATWTWTTT
PBM
Weirauch et al.(2013)
pTH2361
0.991
0.111
estExt_fgeneshNG_pg.C_820014
M01692_2.00
Naegleria gruberi
NNNNNDRH
DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9380
0.991
0.111
SUM1
M01517_2.00
Saccharomyces cerevisiae
NNNDWAWW
WWTWHNNN
PBM
Zhu et al.(2009)
Sum1
0.991
0.000
For this family, TFs with SR scores >
0.990
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIOSGA000456-PA
AT hook
212
224
PKQRGRPRKTITT
BGIOSGA000456-PA
AT hook
234
246
KRPRGRPRKYPLP
BGIOSGA000456-PA
AT hook
295
307
RKGRGRPRKKPVE
BGIOSGA000456-PA
AT hook
335
347
KKKRGRPRKYPAP
BGIOSGA000456-PA
AT hook
540
550
KKGRGRPRKQP
Links
Other
AT hook
family TFs
Other
Oryza indica
TFs
1072 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LPERR01G01880
Leersia perrieri
LPERR01G01880
N
0.000
OBART01G02050
Oryza barthii
OBART01G02050
N
0.000
OB01G11960
Oryza brachyantha
OB01G11960
N
0.000
ORGLA01G0017500
Oryza glaberrima
ORGLA01G0017500
N
0.000
OGLUM01G02200
Oryza glumaepatula
OGLUM01G02200
N
0.000
BGIOSGA002708
Oryza indica
BGIOSGA002708
N
0.000
OLONG_022898
Oryza longistaminata
OLONG_022898
N
0.000
ONIVA01G02210
Oryza nivara
ONIVA01G02210
N
0.000
OPUNC01G01740
Oryza punctata
OPUNC01G01740
N
0.000
OS01G0131600
Oryza sativa
OS01G0131600
N
0.000