CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo6g099440
(
Brassica oleracea
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
Bo6g099440
T018705_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARF8
M01697_2.00
Arabidopsis thaliana
NHTGTCGGN
NCCGACADN
PBM
Weirauch et al.(2014)
pTH8661
0.887
0.887
ARF5
M06701_2.00
Arabidopsis thaliana
WYTTGTCGGN
NCCGACAARW
Dap-seq
OMalley et al.(2016)
MP_col
0.742
0.742
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo6g099440.1
B3
127
229
FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTQQPPAQELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVTGDSVIFIRNERNQLLLGIRHAT
Links
Other
B3
family TFs
Other
Brassica oleracea
TFs
534 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
M437DRAFT_47167
Aureobasidium melanogenum
M437DRAFT_47167
N
0.000
BBA_08510
Beauveria bassiana
BBA_08510
N
0.000
COCMIDRAFT_6077
Bipolaris oryzae
COCMIDRAFT_6077
N
0.000
CCM_04496
Cordyceps militaris
CCM_04496
N
0.000