Cagra.5105s0003 (Capsella grandiflora)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Cagra.5105s0003 T022803_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.995 0.995
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.995 0.995
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.5105s0003.1.p B3 5 98
Cagra.5105s0003.1.p B3 244 338

Links

Other B3 family TFs
Other Capsella grandiflora TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZMAT1 Callithrix jacchus ENSCJAG00000019724 N 0.000
ENSCSAG00000009795 Chlorocebus sabaeus ENSCSAG00000009795 N 0.000
ZMAT1 Gorilla gorilla ENSGGOG00000025784 N 0.000
ZMAT1 Homo sapiens ENSG00000166432 N 0.000
ENSSTOG00000011140 Ictidomys tridecemlineatus ENSSTOG00000011140 N 0.000
ENSMMUP00000002870 Macaca fascicularis ENSMMUP00000002870 N 0.000
ZMAT1 Macaca mulatta ENSMMUG00000002151 N 0.000
ENSNLEG00000007550 Nomascus leucogenys ENSNLEG00000007550 N 0.000
ENSOPRG00000009950 Ochotona princeps ENSOPRG00000009950 N 0.000
ZMAT1 Otolemur garnettii ENSOGAG00000033601 N 0.000
ENSPTRG00000022112 Pan troglodytes ENSPTRG00000022112 N 0.000
ENSPTRG00000041840 Pan troglodytes ENSPTRG00000041840 N 0.000
ENSPPYG00000020561 Pongo abelii ENSPPYG00000020561 N 0.000