BPC1 (Arabidopsis lyrata)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 fgenesh2_kg.5__107__AT2G01930.1 T024603_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC1
M06715_2.00 		Arabidopsis thaliana
GAGAGAGAGAGAGAGAGAGAGAGA
TCTCTCTCTCTCTCTCTCTCTCTC		 Dap-seq
OMalley et al.(2016)
BPC1_col_a 		0.831 0.831
BPC1
M06716_2.00 		Arabidopsis thaliana
RAGAGAGAGARAGAR
YTCTYTCTCTCTCTY		 Dap-seq
OMalley et al.(2016)
BPC1_colamp_a 		0.831 0.831
BPC1
M09775_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BPC1_Q2 		0.831 0.831
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.5__107__AT2G01930.1 BBR 1 280

Links

Other BBR family TFs
Other Arabidopsis lyrata TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BPC1 Arabidopsis thaliana AT2G01930 D 0.831
Bostr.0556s0021 Boechera stricta Bostr.0556s0021 I 0.827
Cagra.3834s0005 Capsella grandiflora Cagra.3834s0005 I 0.875
Carubv10009978m.g Capsella rubella Carubv10009978m.g N 0.702
Carubv10017779m.g Capsella rubella Carubv10017779m.g I 0.882