OMERI10G00680 (Oryza meridionalis)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 OMERI10G00680 T024676_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC1
M06715_2.00 		Arabidopsis thaliana
GAGAGAGAGAGAGAGAGAGAGAGA
TCTCTCTCTCTCTCTCTCTCTCTC		 Dap-seq
OMalley et al.(2016)
BPC1_col_a 		0.738 0.738
BPC1
M06716_2.00 		Arabidopsis thaliana
RAGAGAGAGARAGAR
YTCTYTCTCTCTCTY		 Dap-seq
OMalley et al.(2016)
BPC1_colamp_a 		0.738 0.738
BPC1
M09775_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BPC1_Q2 		0.738 0.738
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI10G00680.1 BBR 53 371
OMERI10G00680.2 BBR 1 42
OMERI10G00680.3 BBR 1 42

Links

Other BBR family TFs
Other Oryza meridionalis TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGOS_AFL033W Ashbya gossypii AGOS_AFL033W I 0.000
Ecym_2263 Eremothecium cymbalariae Ecym_2263 I 0.000
PV06_07668 Exophiala oligosperma PV06_07668 N 0.000
KAFR_0G03520 Kazachstania africana KAFR_0G03520 I 0.000
KLLA0_F10373g Kluyveromyces lactis KLLA0_F10373g I 0.000
Kwal_1631 Kluyveromyces waltii Kwal_1631 I 0.000
SAKL0A06072g Lachancea kluyveri SAKL0A06072g I 0.000
LALA0_S13e03268g Lachancea lanzarotensis LALA0_S13e03268g I 0.000
KLTH0H05720g Lachancea thermotolerans KLTH0H05720g I 0.000
NCAS_0H01240 Naumovozyma castellii NCAS_0H01240 I 0.000
NDAI_0F02050 Naumovozyma dairenensis NDAI_0F02050 I 0.000
SU7_0277 Saccharomyces arboricola SU7_0277 I 0.000
2117_YBR240C Saccharomyces bayanus 2117_YBR240C I 0.000
Scas_Contig597.4 Saccharomyces castellii Scas_Contig597.4 I 0.000
THI2 Saccharomyces cerevisiae YBR240C D 0.000
SKUD_138702 Saccharomyces kudriavzevii SKUD_138702 I 0.000
4848_YBR240C Saccharomyces mikatae 4848_YBR240C I 0.000
1967_YBR240C Saccharomyces paradoxus 1967_YBR240C I 0.000
AACERI_AaceriAFL033W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFL033W I 0.000
TDEL_0B04000 Torulaspora delbrueckii TDEL_0B04000 I 0.000
Kpol_534p28 Vanderwaltozyma polyspora Kpol_534p28 I 0.000
ZBAI_07794 Zygosaccharomyces bailii ZBAI_07794 I 0.000
ZBAI_04285 Zygosaccharomyces bailii ZBAI_04285 I 0.000
ZYRO0G21626g Zygosaccharomyces rouxii ZYRO0G21626g I 0.000