cassava22532.valid.m1 (Manihot esculenta)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 cassava22532.valid.m1 T024794_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava22532.valid.m1 BBR 1 345

Links

Other BBR family TFs
Other Manihot esculenta TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CERSUDRAFT_110807 Ceriporiopsis subvermispora CERSUDRAFT_110807 N
FOMPIDRAFT_1144986 Fomitopsis pinicola FOMPIDRAFT_1144986 N
Genemark.256_g Heterobasidion annosum Genemark.256_g N
HETIRDRAFT_241879 Heterobasidion irregulare HETIRDRAFT_241879 N
HYDPIDRAFT_131245 Hydnomerulius pinastri HYDPIDRAFT_131245 N
PAXRUDRAFT_471964 Paxillus rubicundulus PAXRUDRAFT_471964 N
PILCRDRAFT_813670 Piloderma croceum PILCRDRAFT_813670 N
PISMIDRAFT_392741 Pisolithus microcarpus PISMIDRAFT_392741 N
M404DRAFT_997406 Pisolithus tinctorius M404DRAFT_997406 N
PLEOSDRAFT_1075409 Pleurotus ostreatus PLEOSDRAFT_1075409 N
SERLA73DRAFT_173993 Serpula lacrymans SERLA73DRAFT_173993 N
CY34DRAFT_798208 Suillus luteus CY34DRAFT_798208 N