Carubv10017779m.g (Capsella rubella)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Carubv10017779m.g T024835_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC1
M06715_2.00 		Arabidopsis thaliana
GAGAGAGAGAGAGAGAGAGAGAGA
TCTCTCTCTCTCTCTCTCTCTCTC		 Dap-seq
OMalley et al.(2016)
BPC1_col_a 		0.787 0.787
BPC1
M06716_2.00 		Arabidopsis thaliana
RAGAGAGAGARAGAR
YTCTYTCTCTCTCTY		 Dap-seq
OMalley et al.(2016)
BPC1_colamp_a 		0.787 0.787
BPC1
M09775_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BPC1_Q2 		0.787 0.787
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017779m BBR 1 284

Links

Other BBR family TFs
Other Capsella rubella TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_197789 Agaricus bisporus AGABI2DRAFT_197789 N 0.000
M378DRAFT_34186 Amanita muscaria M378DRAFT_34186 N 0.000
BOTBODRAFT_112907 Botryobasidium botryosum BOTBODRAFT_112907 N 0.000
BOTBODRAFT_27262 Botryobasidium botryosum BOTBODRAFT_27262 N 0.000
CERSUDRAFT_114830 Ceriporiopsis subvermispora CERSUDRAFT_114830 N 0.000
CERSUDRAFT_115065 Ceriporiopsis subvermispora CERSUDRAFT_115065 N 0.000
DACRYDRAFT_36073 Dacryopinax sp DACRYDRAFT_36073 N 0.000
FOMPIDRAFT_1085863 Fomitopsis pinicola FOMPIDRAFT_1085863 N 0.000
FOMPIDRAFT_1033652 Fomitopsis pinicola FOMPIDRAFT_1033652 N 0.000
GALMADRAFT_233958 Galerina marginata GALMADRAFT_233958 N 0.000
GALMADRAFT_246744 Galerina marginata GALMADRAFT_246744 N 0.000
GYMLUDRAFT_174618 Gymnopus luxurians GYMLUDRAFT_174618 N 0.000
M413DRAFT_237712 Hebeloma cylindrosporum M413DRAFT_237712 N 0.000
M413DRAFT_13613 Hebeloma cylindrosporum M413DRAFT_13613 N 0.000
gw1.1.1202.1 Heterobasidion annosum gw1.1.1202.1 N 0.000
HETIRDRAFT_181137 Heterobasidion irregulare HETIRDRAFT_181137 N 0.000
HYDPIDRAFT_99864 Hydnomerulius pinastri HYDPIDRAFT_99864 N 0.000
JAAARDRAFT_103126 Jaapia argillacea JAAARDRAFT_103126 N 0.000
MVLG_00837 Microbotryum violaceum MVLG_00837 N 0.000
e_gw1.12.266.1 Mucor circinelloides e_gw1.12.266.1 N 0.000
PAXRUDRAFT_15625 Paxillus rubicundulus PAXRUDRAFT_15625 N 0.000
PAXRUDRAFT_33927 Paxillus rubicundulus PAXRUDRAFT_33927 N 0.000
PHACADRAFT_254049 Phanerochaete carnosa PHACADRAFT_254049 N 0.000
e_gww2.7.722.1 Phanerochaete chrysosporium e_gww2.7.722.1 N 0.000
e_gwh2.25.53.1 Phanerochaete chrysosporium e_gwh2.25.53.1 N 0.000
fgeneshPB_pg.11__148 Phycomyces blakesleeanus fgeneshPB_pg.11__148 N 0.000
PILCRDRAFT_122351 Piloderma croceum PILCRDRAFT_122351 N 0.000
PILCRDRAFT_33349 Piloderma croceum PILCRDRAFT_33349 N 0.000
PISMIDRAFT_283095 Pisolithus microcarpus PISMIDRAFT_283095 N 0.000
M404DRAFT_998133 Pisolithus tinctorius M404DRAFT_998133 N 0.000
PLEOSDRAFT_1074679 Pleurotus ostreatus PLEOSDRAFT_1074679 N 0.000
PLEOSDRAFT_1060467 Pleurotus ostreatus PLEOSDRAFT_1060467 N 0.000
POSPLDRAFT_135062 Postia placenta POSPLDRAFT_135062 N 0.000
POSPLDRAFT_47293 Postia placenta POSPLDRAFT_47293 N 0.000
V565_015440 Rhizoctonia solani V565_015440 N 0.000
SCHCODRAFT_86194 Schizophyllum commune SCHCODRAFT_86194 N 0.000
SCLCIDRAFT_1225180 Scleroderma citrinum SCLCIDRAFT_1225180 N 0.000
SERLA73DRAFT_176212 Serpula lacrymans SERLA73DRAFT_176212 N 0.000
SERLA73DRAFT_66208 Serpula lacrymans SERLA73DRAFT_66208 N 0.000
M422DRAFT_147299 Sphaerobolus stellatus M422DRAFT_147299 N 0.000
e_gw1.7.560.1 Sporobolomyces roseus e_gw1.7.560.1 N 0.000
BN946_scf185001.g47 Trametes cinnabarina BN946_scf185001.g47 N 0.000
gw1.8.218.1 Tremella mesenterica gw1.8.218.1 N 0.000
A1Q1_01999 Trichosporon asahii A1Q1_01999 N 0.000
M407DRAFT_37211 Tulasnella calospora M407DRAFT_37211 N 0.000
M407DRAFT_60737 Tulasnella calospora M407DRAFT_60737 N 0.000