Gorai.002G124900 (Gossypium raimondii)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Gorai.002G124900 T024857_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.716 0.716
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G124900.1 BBR 1 336
Gorai.002G124900.2 BBR 1 336
Gorai.002G124900.3 BBR 1 326
Gorai.002G124900.4 BBR 1 326
Gorai.002G124900.5 BBR 1 326
Gorai.002G124900.6 BBR 1 336
Gorai.002G124900.7 BBR 1 336

Links

Other BBR family TFs
Other Gossypium raimondii TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
COCMIDRAFT_96253 Bipolaris oryzae COCMIDRAFT_96253 N
EDP45324.1 Malassezia globosa EDP45324.1 N
MSY001_2707 Malassezia sympodialis MSY001_2707 N
MELLADRAFT_31636 Melampsora laricipopulina MELLADRAFT_31636 N
estExt_fgeneshMC_pg.C_30057 Mucor circinelloides estExt_fgeneshMC_pg.C_30057 N
fgeneshMC_pg.1_#_1575 Mucor circinelloides fgeneshMC_pg.1_#_1575 N
fgeneshMC_pg.3_#_885 Mucor circinelloides fgeneshMC_pg.3_#_885 I
fgeneshMC_pg.4_#_663 Mucor circinelloides fgeneshMC_pg.4_#_663 N
fgeneshMC_pg.8_#_88 Mucor circinelloides fgeneshMC_pg.8_#_88 N
fgeneshPB_pg.2__345 Phycomyces blakesleeanus fgeneshPB_pg.2__345 N
fgeneshPB_pg.3__11 Phycomyces blakesleeanus fgeneshPB_pg.3__11 N
gw1.8.425.1 Phycomyces blakesleeanus gw1.8.425.1 N
estExt_fgeneshPB_pg.C_50592 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50592 N
estExt_fgeneshPB_pg.C_440039 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_440039 N
PSEUBRA_SCAF2g02695 Pseudozyma brasiliensis PSEUBRA_SCAF2g02695 N
PHSY_003887 Pseudozyma hubeiensis PHSY_003887 N
GLOINDRAFT_44505 Rhizophagus irregularis GLOINDRAFT_44505 N
RO3G_04904 Rhizopus oryzae RO3G_04904 N
RO3G_16953 Rhizopus oryzae RO3G_16953 N
RO3G_14274 Rhizopus oryzae RO3G_14274 N
RO3G_09726 Rhizopus oryzae RO3G_09726 N
RO3G_06395 Rhizopus oryzae RO3G_06395 I
RO3G_05037 Rhizopus oryzae RO3G_05037 N
RO3G_02446 Rhizopus oryzae RO3G_02446 N
sr12730 Sporisorium reilianum sr12730 N
K437DRAFT_222727 Tilletiaria anomala K437DRAFT_222727 N
TRV_07259 Trichophyton verrucosum TRV_07259 I
UHOR_02465 Ustilago hordei UHOR_02465 I