POPTR_0001s39240 (Populus trichocarpa)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 POPTR_0001s39240 T027346_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s39240.1 BED ZF 17 65

Links

Other BED ZF family TFs
Other Populus trichocarpa TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.28625s0227 Boechera stricta Bostr.28625s0227 N 0.750
Bo9g044150 Brassica oleracea Bo9g044150 N 0.705
Bo1g129970 Brassica oleracea Bo1g129970 N 0.750
PK12364.1 Cannabis sativa PK12364.1 N 0.841
Cagra.0007s0024 Capsella grandiflora Cagra.0007s0024 N 0.750
Carubv10013145m.g Capsella rubella Carubv10013145m.g N 0.750
Cucsa.057910 Cucumis sativus Cucsa.057910 N 0.886
Thhalv10020233m.g Eutrema salsugineum Thhalv10020233m.g N 0.750
gene27341-v1.0-hybrid Fragaria vesca gene27341-v1.0-hybrid N 0.886
gene24495-v1.0-hybrid Fragaria vesca gene24495-v1.0-hybrid N 0.738
GLYMA15G27362 Glycine max GLYMA15G27362 N 0.909
GLYMA09G15135 Glycine max GLYMA09G15135 N 0.909
Gorai.004G271300 Gossypium raimondii Gorai.004G271300 N 0.818
Gorai.007G331900 Gossypium raimondii Gorai.007G331900 N 0.864
Lus10005558.g Linum usitatissimum Lus10005558.g N 0.864
cassava7664.valid.m1 Manihot esculenta cassava7664.valid.m1 N 0.773
cassava7665.valid.m1 Manihot esculenta cassava7665.valid.m1 N 0.773
POPTR_0011s10500 Populus trichocarpa POPTR_0011s10500 N 0.977
Pm014562 Prunus mume Pm014562 N 0.738
Pm011252 Prunus mume Pm011252 N 0.864
PRUPE_ppa002590mg Prunus persica PRUPE_ppa002590mg N 0.738
PRUPE_ppa002416mg Prunus persica PRUPE_ppa002416mg N 0.864
SapurV1A.0020s0660 Salix purpurea SapurV1A.0020s0660 N 1.000
SapurV1A.0026s0130 Salix purpurea SapurV1A.0026s0130 N 0.955
Solyc10g007470.2 Solanum lycopersicum Solyc10g007470.2 N 0.909
PGSC0003DMG400021296 Solanum tuberosum PGSC0003DMG400021296 N 0.909
TCM_032128 Theobroma cacao TCM_032128 N 0.909
VIT_19s0014g00320 Vitis vinifera VIT_19s0014g00320 N 0.841