CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
BIM2
(
Arabidopsis thaliana
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
AT1G69010
T030610_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
(Direct)
(Direct)
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
(Direct)
(Direct)
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.894
0.804
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.894
0.804
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.894
0.804
BIM1
M09787_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.894
0.804
fgenesh1_pg.scaffold_37000071
M01757_2.00
Physcomitrella patens
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8584
0.861
0.765
SPT
M01709_2.00
Arabidopsis thaliana
NCACGTGSN
NSCACGTGN
PBM
Weirauch et al.(2014)
pTH8111
0.851
0.490
UNE10
M01705_2.00
Arabidopsis thaliana
HCACGTGM
KCACGTGD
PBM
Weirauch et al.(2014)
pTH8112
0.843
0.471
For this family, TFs with SR scores >
0.838
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01701_2.00
bHLH
46
96
IRSKHSVTEQRRRSKINERFQILRELIPNSEQKRDTASFLLEVIDYVQYLQ
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G69010.1
bHLH
46
96
IRSKHSVTEQRRRSKINERFQILRELIPNSEQKRDTASFLLEVIDYVQYLQ
Links
Other
bHLH
family TFs
Other
Arabidopsis thaliana
TFs
301 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000005129
Ailuropoda melanoleuca
ENSAMEG00000005129
I
ENSAMEG00000015506
Ailuropoda melanoleuca
ENSAMEG00000015506
I
Alligator_sinensis_CCG007971.1
Alligator sinensis
Alligator_sinensis_CCG007971.1
I
Alligator_sinensis_CCG012315.1
Alligator sinensis
Alligator_sinensis_CCG012315.1
I
ENSAPLG00000003145
Anas platyrhynchos
ENSAPLG00000003145
I
SREBF2
Anolis carolinensis
ENSACAG00000004146
I
Afo_R007963
Aptenodytes forsteri
Afo_R007963
I
ENSAMXG00000008028
Astyanax mexicanus
ENSAMXG00000008028
I
ENSAMXG00000009016
Astyanax mexicanus
ENSAMXG00000009016
I
ENSBTAP00000018956-D1
Bos grunniens
ENSBTAP00000018956-D1
I
SREBF1
Bos taurus
ENSBTAG00000007884
I
ENSCJAG00000002378
Callithrix jacchus
ENSCJAG00000002378
I
SREBF1
Callithrix jacchus
ENSCJAG00000008953
I
Aan_R009070
Calypte anna
Aan_R009070
I
Aan_R013218
Calypte anna
Aan_R013218
I
SREBF2
Canis familiaris
ENSCAFG00000001013
I
SREBF1
Canis familiaris
ENSCAFG00000018436
I
SREBF1
Cavia porcellus
ENSCPOG00000002439
I
SREBF2
Cavia porcellus
ENSCPOG00000013199
I
Cmyd_10007930
Chelonia mydas
Cmyd_10007930
I
Cmyd_10008393
Chelonia mydas
Cmyd_10008393
I
ENSCSAG00000005734
Chlorocebus sabaeus
ENSCSAG00000005734
I
ENSCSAG00000008412
Chlorocebus sabaeus
ENSCSAG00000008412
I
srebf2
Danio rerio
ENSDARG00000063438
I
srebf1
Danio rerio
ENSDARG00000067607
I
SREBF2
Dasypus novemcinctus
ENSDNOG00000048031
I
YQE_07365
Dendroctonus ponderosae
YQE_07365
I
Srebf2
Dipodomys ordii
ENSDORG00000000691
I
Srebf1
Dipodomys ordii
ENSDORG00000012333
I
SREBP
Drosophila ananassae
FBgn0100584
I
SREBP
Drosophila erecta
FBgn0108291
I
SREBP
Drosophila grimshawi
FBgn0122129
I
HLH106
Drosophila melanogaster
FBgn0261283
D
SREBP
Drosophila persimilis
FBgn0153336
I
SREBP
Drosophila pseudoobscura
FBgn0081122
I
SREBP
Drosophila sechellia
FBgn0174544
I
SREBP
Drosophila simulans
FBgn0186498
I
SREBP
Drosophila virilis
FBgn0198580
I
SREBP
Drosophila willistoni
FBgn0219495
I
SREBP
Drosophila yakuba
FBgn0236960
I
SREBF2
Echinops telfairi
ENSETEG00000000459
I
SREBF1
Echinops telfairi
ENSETEG00000004179
I
SREBF1
Equus caballus
ENSECAG00000019802
I
SREBF2
Equus caballus
ENSECAG00000024608
I
SREBF2
Erinaceus europaeus
ENSEEUG00000003437
I
SREBF1
Felis catus
ENSFCAG00000001983
I
SREBF2
Felis catus
ENSFCAG00000014289
I
ENSFALG00000011811
Ficedula albicollis
ENSFALG00000011811
I
ENSFALG00000013762
Ficedula albicollis
ENSFALG00000013762
I
ENSGMOG00000006325
Gadus morhua
ENSGMOG00000006325
I
ENSGALG00000011916
Gallus gallus
ENSGALG00000011916
I
SREBF1
Gallus gallus
ENSGALG00000027188
I
srebf2
Gasterosteus aculeatus
ENSGACG00000007259
I
srebf1
Gasterosteus aculeatus
ENSGACG00000012064
I
Gfo_R004756
Geospiza fortis
Gfo_R004756
I
Gfo_R006283
Geospiza fortis
Gfo_R006283
I
SREBF1
Gorilla gorilla
ENSGGOG00000002713
I
SREBF2
Gorilla gorilla
ENSGGOG00000012065
I
HHAL003331-PA
Halyomorpha halys
HHAL003331-PA
I
SREBF1
Homo sapiens
ENSG00000072310
D
SREBF2
Homo sapiens
ENSG00000198911
D
ENSSTOG00000012916
Ictidomys tridecemlineatus
ENSSTOG00000012916
I
ENSSTOG00000014939
Ictidomys tridecemlineatus
ENSSTOG00000014939
I
ENSLACG00000013149
Latimeria chalumnae
ENSLACG00000013149
I
ENSLOCG00000008766
Lepisosteus oculatus
ENSLOCG00000008766
I
ENSLOCG00000011887
Lepisosteus oculatus
ENSLOCG00000011887
I
LotgiG224211
Lottia gigantea
LotgiG224211
I
SREBF2
Loxodonta africana
ENSLAFG00000005791
I
SREBF1
Loxodonta africana
ENSLAFG00000021644
I
ENSP00000348069
Macaca fascicularis
ENSP00000348069
I
ENSP00000354476
Macaca fascicularis
ENSP00000354476
I
SREBF2
Macaca mulatta
ENSMMUG00000003357
I
SREBF1
Macaca mulatta
ENSMMUG00000023375
I
ENSMEUG00000001306
Macropus eugenii
ENSMEUG00000001306
I
ENSMEUG00000011986
Macropus eugenii
ENSMEUG00000011986
I
SREBF2
Meleagris gallopavo
ENSMGAG00000012074
I
SREBF2
Microcebus murinus
ENSMICG00000000913
I
SREBF1
Microcebus murinus
ENSMICG00000012535
I
SREBF1
Monodelphis domestica
ENSMODG00000014074
I
SREBF2
Monodelphis domestica
ENSMODG00000016612
I
ENSMPUG00000000024
Mustela putorius furo
ENSMPUG00000000024
I
ENSMPUG00000016372
Mustela putorius furo
ENSMPUG00000016372
I
Srebf1
Mus musculus
ENSMUSG00000020538
D
Srebf2
Mus musculus
ENSMUSG00000022463
D
Myotis_brandtii_SREBF1_10023215
Myotis brandtii
Myotis_brandtii_SREBF1_10023215
I
Myotis_brandtii_SREBF2_10014539
Myotis brandtii
Myotis_brandtii_SREBF2_10014539
I
SREBF2
Myotis lucifugus
ENSMLUG00000002549
I
NV10553
Nasonia vitripennis
NV10553
I
ENSNLEG00000013625
Nomascus leucogenys
ENSNLEG00000013625
I
SREBF1
Ochotona princeps
ENSOPRG00000015069
I
Ogr11708
Ophisaurus gracilis
Ogr11708
I
Ogr14454
Ophisaurus gracilis
Ogr14454
I
ENSONIG00000002304
Oreochromis niloticus
ENSONIG00000002304
I
ENSONIG00000008375
Oreochromis niloticus
ENSONIG00000008375
I
SREBF2
Ornithorhynchus anatinus
ENSOANG00000002461
I
SREBF1
Ornithorhynchus anatinus
ENSOANG00000012278
I
SREBF2
Oryctolagus cuniculus
ENSOCUG00000003178
I
srebf1
Oryzias latipes
ENSORLG00000009437
I
srebf2
Oryzias latipes
ENSORLG00000014672
I
SREBF1
Otolemur garnettii
ENSOGAG00000002910
I
SREBF2
Otolemur garnettii
ENSOGAG00000014736
I
ENSOARG00000001504
Ovis aries
ENSOARG00000001504
I
ENSOARG00000018717
Ovis aries
ENSOARG00000018717
I
SREBF2
Pan troglodytes
ENSPTRG00000014439
I
ENSPANG00000008691
Papio anubis
ENSPANG00000008691
I
ENSPANG00000023675
Papio anubis
ENSPANG00000023675
I
ENSPSIG00000014746
Pelodiscus sinensis
ENSPSIG00000014746
I
ENSPMAG00000001400
Petromyzon marinus
ENSPMAG00000001400
I
ENSPFOG00000000475
Poecilia formosa
ENSPFOG00000000475
I
ENSPFOG00000010306
Poecilia formosa
ENSPFOG00000010306
I
Pvit_05020
Pogona vitticeps
Pvit_05020
I
Pvit_18605
Pogona vitticeps
Pvit_18605
I
ENSPPYG00000008037
Pongo abelii
ENSPPYG00000008037
I
ENSPPYG00000011880
Pongo abelii
ENSPPYG00000011880
I
SREBF2
Procavia capensis
ENSPCAG00000006497
I
SREBF1
Procavia capensis
ENSPCAG00000014903
I
SREBF2
Pteropus vampyrus
ENSPVAG00000001177
I
SREBF1
Pteropus vampyrus
ENSPVAG00000005765
I
Srebf1
Rattus norvegicus
ENSRNOG00000003463
I
Srebf2
Rattus norvegicus
ENSRNOG00000007400
I
RPRC014734
Rhodnius prolixus
RPRC014734
I
Sakowv30028178m.g
Saccoglossus kowalevskii
Sakowv30028178m.g
I
ENSSHAG00000011682
Sarcophilus harrisii
ENSSHAG00000011682
I
ENSSHAG00000018607
Sarcophilus harrisii
ENSSHAG00000018607
I
ENSSARG00000006597
Sorex araneus
ENSSARG00000006597
I
ENSSSCG00000023124
Sus scrofa
ENSSSCG00000023124
I
SREBF2
Sus scrofa
ENSSSCG00000026092
I
SREBF1
Taeniopygia guttata
ENSTGUG00000007313
I
ENSTGUG00000009772
Taeniopygia guttata
ENSTGUG00000009772
I
srebf2
Takifugu rubripes
ENSTRUG00000007413
I
tetur08g03870
Tetranychus urticae
tetur08g03870
I
srebf2
Tetraodon nigroviridis
ENSTNIG00000010835
I
srebf1
Tetraodon nigroviridis
ENSTNIG00000011957
I
TC007163
Tribolium castaneum
TC007163
I
SREBF2
Tupaia belangeri
ENSTBEG00000016542
I
SREBF2
Tursiops truncatus
ENSTTRG00000017350
I
Tal_R010023
Tyto alba
Tal_R010023
I
srebf2.L
Xenopus laevis
XB-GENE-1011364
I
srebf2
Xenopus tropicalis
XB-GENE-1011360
I
srebf1
Xenopus tropicalis
XB-GENE-987572
I
XP_002944649
Xenopus tropicalis
XP_002944649
I
ENSXMAG00000003080
Xiphophorus maculatus
ENSXMAG00000003080
I
ENSXMAG00000014774
Xiphophorus maculatus
ENSXMAG00000014774
I